Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 2237.2 1082 100.0
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1319.3 1073 62.5
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1305.8 1092 60.7
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1275.0 1086 58.7
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1251.1 1082 58.7
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1229.5 1079 59.4
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1226.5 1095 57.8
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1225.3 1080 57.3
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1207.2 1075 57.8
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1194.5 1080 56.8
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1193.3 1085 57.3
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1190.6 1097 55.6
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1182.9 1084 56.4
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1182.2 1134 54.3
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1180.6 1085 57.2
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1176.8 1077 56.5
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1176.8 1082 56.3
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1176.8 1084 56.7
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1169.5 1086 55.0
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1151.7 1084 55.4
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1151.0 1085 54.4
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1150.2 1078 55.5
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1149.8 1144 51.7
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1147.9 1084 55.0
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1144.8 1170 52.8
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1144.0 1037 56.0
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1143.6 1087 55.4
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1142.9 1083 55.0
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1140.2 1087 53.5
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1134.0 1085 53.8
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1132.9 1082 54.9
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1123.2 1078 53.2
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1121.7 1104 52.8
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1120.9 1075 53.9
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1116.3 1096 53.0
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1116.3 1090 53.1
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1109.7 1074 52.9
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1109.0 1080 53.9
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1108.2 1085 52.4
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1103.2 1076 52.9
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1100.9 1086 52.2
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1100.9 1081 52.3
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1098.2 1091 52.3
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1096.3 989 56.7
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1094.7 1077 52.4
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1094.3 1090 52.0
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1092.8 1102 53.0
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1091.3 1087 52.3
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1089.7 1102 51.1
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1087.0 1091 51.6
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1084.7 1076 51.9
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1082.0 1080 51.5
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1082.0 1076 51.8
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1082.0 1088 51.3
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1081.2 1104 52.8
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1079.7 1090 51.8
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1079.3 1074 51.8
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1078.9 1091 51.6
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1077.8 1077 53.0
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1077.8 1083 52.6
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1077.0 1083 51.9
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1075.1 980 55.0
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 7.4e-312 1074.7 1076 51.8
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 8.9e-311 1070.5 1076 51.6
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 1.6e-309 1066.2 1088 51.2
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 2.8e-309 1065.4 1058 52.2
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 6.8e-308 1060.8 1097 51.4
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 1.4e-305 1053.1 1082 50.9
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 3.2e-305 1052.0 1085 52.0
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 3.5e-304 1048.5 1097 50.8
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 1.1e-302 1043.5 1096 49.9
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 1.7e-298 1029.6 1082 50.2
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 2.2e-298 1029.2 1066 50.5
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 1.6e-296 1023.1 1081 49.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 2.7e-296 1022.3 1068 50.7
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.8e-291 1004.6 1167 47.9
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 2.1e-288 996.1 1072 48.8
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 2.2e-282 976.1 1035 49.4
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 4.2e-281 971.8 833 58.6
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 1.2e-280 970.3 1112 46.9
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.5e-272 942.2 829 57.5
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 1.1e-268 930.6 1073 47.2
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 1.7e-261 906.7 1099 47.1
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 4.1e-260 902.1 1085 46.2
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.5e-241 839.7 743 57.7
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.2e-240 837.4 741 58.0
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.9e-225 786.9 741 53.7
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.1e-196 689.5 1137 39.4
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 5.4e-196 689.1 628 56.1
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.3e-194 684.5 609 58.0
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.6e-190 670.2 1081 38.2
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 6.0e-187 659.1 601 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 9.3e-180 635.2 1166 36.1
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 2.1e-179 634.0 536 62.7
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 1.0e-178 631.7 1170 34.6
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.6e-174 617.1 604 53.5
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.9e-169 600.9 590 54.1
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 7.6e-166 589.0 563 56.1
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.0e-162 577.0 789 42.3
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 9.3e-156 555.4 1096 34.9
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 6.7e-130 469.5 599 45.9
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 3.8e-125 453.8 454 51.1
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 2.4e-111 407.9 498 45.2
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 2.0e-110 404.8 1042 30.5
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.5e-94 350.9 513 42.5
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 5.2e-90 337.0 315 56.2
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 6.8e-90 336.7 415 46.0
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-85 322.4 360 48.3
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.2e-78 299.3 332 49.7
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.5e-70 271.2 303 45.5
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 1.3e-69 269.2 349 45.3
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 3.5e-62 244.6 1290 24.0
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.3e-60 238.0 298 43.6
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 3.6e-59 234.6 369 38.2
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 4.0e-58 231.1 260 50.0
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 2.2e-56 225.3 193 57.5
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 1.0e-53 216.5 202 50.5
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 2.3e-53 215.3 253 49.0
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 8.7e-53 213.4 849 26.1
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.5e-49 202.6 250 48.8
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 2.5e-47 195.3 208 50.0
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 9.3e-47 193.4 254 42.1
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-44 184.9 636 25.2
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 8.2e-43 180.3 179 51.4
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.4e-34 152.9 190 44.7
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 6.5e-32 144.1 158 44.3
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 4.4e-28 131.3 111 55.0
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 2.6e-25 122.1 75 78.7
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.0e-24 120.2 87 62.1
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 3.3e-20 105.1 115 45.2
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 3.1e-18 98.6 100 52.0
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 2.9e-16 92.0 86 52.3
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 3.2e-15 88.6 75 62.7
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.4e-12 78.2 55 67.3
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.4e-12 78.2 55 67.3
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.8e-11 75.5 56 66.1
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.3e-11 74.3 55 65.5
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 3.1e-10 72.0 86 44.2
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 4.1e-10 71.6 59 59.3
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.7e-09 68.9 53 66.0
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 1.1e-07 63.5 51 60.8


User provided reference genes

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