Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 5.2e-76 287.7 154 100.0
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 8.3e-74 280.4 150 100.0
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.8e-57 226.1 150 80.0
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.8e-57 226.1 150 80.0
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 3.2e-57 225.3 150 80.0
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 7.0e-57 224.2 150 79.3
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 5.9e-56 221.1 150 76.7
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 2.9e-55 218.8 150 76.0
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 3.9e-55 218.4 150 77.3
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 6.6e-55 217.6 150 77.3
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 6.6e-55 217.6 150 76.0
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 6.6e-55 217.6 150 76.0
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 6.6e-55 217.6 150 76.0
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 8.6e-55 217.2 150 76.7
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 1.1e-54 216.9 151 78.1
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 1.1e-54 216.9 150 76.0
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 1.9e-54 216.1 148 77.0
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.5e-54 215.7 141 80.1
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 4.3e-54 214.9 150 77.3
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 4.3e-54 214.9 150 76.7
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 5.6e-54 214.5 150 75.3
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 5.6e-54 214.5 150 75.3
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 5.6e-54 214.5 150 76.0
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 5.6e-54 214.5 150 76.0
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 7.3e-54 214.2 150 76.0
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.6e-53 213.0 150 75.3
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 3.6e-53 211.8 150 74.7
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 8.0e-53 210.7 150 74.0
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 8.0e-53 210.7 144 78.5
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.8e-52 209.5 150 74.0
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 2.3e-52 209.1 150 76.7
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 3.1e-52 208.8 144 77.1
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 3.1e-52 208.8 150 76.0
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.0e-52 208.4 150 73.3
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.0e-52 208.4 150 73.3
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 5.2e-52 208.0 150 76.0
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 5.2e-52 208.0 150 76.0
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 8.9e-52 207.2 150 73.3
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 8.9e-52 207.2 150 73.3
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.2e-51 206.8 150 75.3
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.2e-51 206.8 150 73.3
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.2e-51 206.8 150 73.3
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 3.4e-51 205.3 144 75.7
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 3.4e-51 205.3 150 74.7
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 5.8e-51 204.5 144 75.0
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.2e-50 202.6 150 72.0
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 3.7e-50 201.8 150 72.7
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 1.1e-49 200.3 150 70.0
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 1.4e-49 199.9 150 70.0
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 1.9e-49 199.5 150 70.0
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 2.4e-49 199.1 148 70.3
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 2.4e-49 199.1 144 73.6
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 9.2e-49 197.2 150 70.0
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 2.7e-48 195.7 150 69.3
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 2.7e-48 195.7 130 79.2
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 3.5e-48 195.3 129 80.6
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 1.0e-47 193.7 129 79.1
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.7e-47 193.0 150 68.7
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 1.7e-47 193.0 150 70.7
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 3.9e-47 191.8 140 71.4
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 5.0e-47 191.4 150 68.7
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 6.6e-47 191.0 150 68.7
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.1e-46 190.3 130 79.2
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.1e-46 190.3 150 68.0
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 1.5e-46 189.9 144 71.5
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 3.3e-46 188.7 150 69.3
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 3.3e-46 188.7 150 69.3
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 4.3e-46 188.3 149 66.4
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 7.3e-46 187.6 150 66.0
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.6e-45 186.4 150 66.0
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 2.8e-45 185.7 150 65.3
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 2.8e-45 185.7 175 60.0
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 8.1e-45 184.1 150 68.7
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 8.1e-45 184.1 150 66.0
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 1.8e-44 183.0 147 66.7
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 1.8e-44 183.0 150 64.7
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 2.3e-44 182.6 150 66.0
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 5.2e-44 181.4 150 66.7
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 1.5e-43 179.9 150 68.7
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 2.0e-43 179.5 150 64.7
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 5.8e-43 177.9 136 69.9
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 5.8e-43 177.9 150 63.3
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 7.5e-43 177.6 147 64.6
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 9.8e-43 177.2 150 63.3
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 2.9e-42 175.6 136 69.1
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.4e-41 173.3 150 61.3
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 2.4e-41 172.6 134 68.7
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 2.4e-41 172.6 134 68.7
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 2.4e-41 172.6 134 68.7
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 2.4e-41 172.6 150 62.0
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 5.4e-41 171.4 150 62.0
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 7.1e-41 171.0 150 61.3
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 2.1e-40 169.5 150 62.0
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 5.1e-39 164.9 116 75.9
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 4.3e-38 161.8 151 61.6
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 7.3e-38 161.0 150 62.7
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 1.2e-37 160.2 144 61.8
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 3.2e-33 145.6 130 65.4
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 1.2e-27 127.1 97 72.2
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.5e-27 126.7 97 72.2
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 6.4e-26 121.3 101 64.4
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 8.4e-26 120.9 153 45.8
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.7e-24 115.9 147 48.3
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 2.3e-23 112.8 78 74.4
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 3.0e-23 112.5 97 64.9
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.1e-22 110.5 141 47.5
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 2.8e-21 105.9 95 57.9
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.0e-19 99.8 91 67.0
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.6e-19 99.4 140 49.3
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 8.4e-18 94.4 90 67.8
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 4.3e-14 82.0 52 75.0
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 1.4e-09 67.0 47 74.5
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 1.2e-08 63.9 88 43.2


User provided reference genes

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