Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 1.1e-164 583.2 291 100.0
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.3e-117 426.8 291 72.2
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 3.7e-115 418.7 294 70.7
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.1e-114 417.2 288 71.2
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 4.1e-114 415.2 291 70.1
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 5.3e-114 414.8 292 69.9
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 4.5e-113 411.8 291 70.1
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.4e-111 406.8 290 69.7
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 2.1e-110 402.9 292 68.2
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 2.1e-110 402.9 281 69.8
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.0e-109 400.6 292 68.8
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 1.8e-109 399.8 287 69.3
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.3e-109 399.4 289 67.1
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 3.9e-109 398.7 255 76.1
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 6.7e-109 397.9 289 66.8
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.5e-108 396.7 290 68.6
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 1.7e-107 393.3 291 68.7
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.2e-107 392.9 287 67.6
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.8e-107 392.5 308 64.0
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 4.8e-107 391.7 289 67.8
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 2.4e-106 389.4 284 67.6
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 3.1e-106 389.0 290 65.9
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.5e-105 386.7 287 66.9
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 2.0e-105 386.3 286 67.1
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 2.6e-105 386.0 286 66.8
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 5.9e-105 384.8 289 65.7
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 7.7e-105 384.4 291 66.3
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.0e-104 384.0 288 66.0
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.7e-104 383.3 281 66.5
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.2e-104 382.9 289 64.7
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 5.0e-104 381.7 260 70.0
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 5.0e-104 381.7 288 65.6
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 9.4e-103 377.5 286 64.3
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 3.6e-102 375.6 288 64.9
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 3.6e-102 375.6 287 65.5
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.0e-101 374.0 285 65.6
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 5.1e-101 371.7 285 65.6
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 2.6e-100 369.4 281 64.1
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 2.6e-100 369.4 291 65.3
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 3.3e-100 369.0 246 70.3
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 3.3e-100 369.0 282 66.7
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 4.4e-100 368.6 265 69.4
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.2e-99 366.3 257 67.7
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.8e-99 365.9 222 78.8
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.8e-99 365.9 284 64.4
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 2.8e-99 365.9 280 64.6
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 4.8e-99 365.2 281 63.7
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 4.8e-99 365.2 280 64.6
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 4.8e-99 365.2 281 63.3
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 6.3e-99 364.8 281 64.8
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.8e-98 363.2 282 65.6
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.8e-98 363.2 292 63.0
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 2.4e-98 362.8 249 69.9
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 4.1e-98 362.1 282 62.4
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.2e-97 360.5 284 64.4
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.5e-97 359.0 292 61.3
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 5.9e-97 358.2 282 61.3
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 2.2e-96 356.3 254 66.9
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 2.9e-96 355.9 249 69.1
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.8e-96 355.5 285 59.6
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 6.5e-96 354.8 285 61.8
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 1.1e-95 354.0 282 60.6
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.4e-95 353.6 274 64.6
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.4e-95 353.6 314 58.9
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.4e-95 353.6 282 60.6
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.9e-95 353.2 282 60.6
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 2.5e-95 352.8 281 61.6
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 8.0e-94 347.8 288 63.2
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 8.8e-93 344.4 282 59.9
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 3.3e-92 342.4 250 67.6
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.3e-91 340.5 282 61.7
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.3e-91 340.5 291 60.5
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 3.7e-91 339.0 224 69.2
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.1e-90 337.4 269 63.2
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.8e-90 336.7 251 64.9
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 5.3e-90 335.1 229 69.4
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 5.3e-90 335.1 251 67.3
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 7.0e-90 334.7 253 60.9
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 9.1e-90 334.3 217 71.9
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.5e-89 332.0 251 64.5
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 5.9e-89 331.6 290 58.6
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 2.9e-88 329.3 337 54.3
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 2.9e-88 329.3 225 67.6
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 2.9e-88 329.3 228 69.3
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 3.2e-87 325.9 224 66.1
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.1e-86 321.6 250 64.8
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 2.3e-85 319.7 318 54.7
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 3.0e-85 319.3 291 57.4
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 4.0e-85 318.9 250 64.8
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 5.7e-84 315.1 234 63.7
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 5.7e-84 315.1 263 62.0
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.2e-83 313.2 327 52.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.1e-82 310.8 270 59.3
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.8e-82 310.1 244 59.8
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.3e-82 308.5 335 50.1
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 7.0e-82 308.1 229 64.2
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.6e-81 307.0 291 53.3
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.0e-80 304.3 291 58.1
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 3.8e-80 302.4 250 59.2
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 3.8e-80 302.4 250 59.2
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 8.5e-80 301.2 250 59.2
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 8.5e-80 301.2 250 59.2
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.1e-79 300.8 191 74.9
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 3.2e-79 299.3 217 68.7
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 1.8e-77 293.5 229 63.3
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.4e-76 289.3 251 58.6
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 3.1e-74 282.7 169 78.7
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 3.6e-70 269.2 166 76.5
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 3.6e-70 269.2 172 73.8
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 2.0e-68 263.5 255 56.5
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 2.9e-64 249.6 282 48.6
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 6.0e-57 225.3 210 51.0
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 7.8e-57 224.9 219 49.8
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 5.0e-56 222.2 208 50.5
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 4.3e-55 219.2 263 48.3
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 7.3e-55 218.4 212 49.5
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.1e-54 216.9 143 71.3
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 6.2e-54 215.3 133 76.7
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 9.5e-47 191.4 152 60.5
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 8.1e-46 188.3 227 43.6
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 1.1e-45 188.0 137 67.9
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 5.4e-42 175.6 105 77.1
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 4.2e-34 149.4 131 56.5
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 1.7e-27 127.5 187 35.8
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.0e-24 118.2 131 50.4
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.7e-24 117.5 119 53.8
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 3.3e-23 113.2 80 66.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 2.8e-22 110.2 80 63.8
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 4.8e-22 109.4 189 33.9
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 4.9e-19 99.4 87 50.6
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 6.0e-17 92.4 70 60.0
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.3e-16 91.3 82 57.3
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 9.6e-15 85.1 179 27.9
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.3e-14 84.7 95 46.3
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 1.0e-11 75.1 47 74.5
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.2e-10 69.7 37 83.8
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.5e-07 60.5 49 59.2
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 3.3e-07 60.1 34 79.4
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 9.6e-07 58.5 52 50.0
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 2.8e-06 57.0 75 41.3


User provided reference genes

Program Settings