Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 6.1e-55 217.2 109 100.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.0e-35 150.6 86 86.0
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 4.1e-27 124.8 91 68.1
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.7e-26 120.6 67 86.6
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 7.7e-26 120.6 67 86.6
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.0e-25 120.2 93 65.6
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.7e-25 119.4 93 65.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 2.9e-25 118.6 76 77.6
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 5.0e-25 117.9 67 83.6
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 6.5e-25 117.5 67 88.1
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 6.5e-25 117.5 67 85.1
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 8.6e-25 117.1 90 66.7
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 8.6e-25 117.1 67 85.1
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 8.6e-25 117.1 67 85.1
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.1e-24 116.7 67 86.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.1e-24 116.7 67 85.1
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.1e-24 116.7 67 82.1
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.5e-24 116.3 68 80.9
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.5e-24 116.3 67 86.6
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.5e-24 116.3 67 86.6
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.9e-24 115.9 67 82.1
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 3.3e-24 115.2 67 83.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.2e-24 114.8 67 85.1
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 4.2e-24 114.8 67 80.6
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 4.2e-24 114.8 67 83.6
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 5.5e-24 114.4 67 83.6
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 5.5e-24 114.4 67 82.1
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 5.5e-24 114.4 67 82.1
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 5.5e-24 114.4 67 83.6
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.5e-24 114.4 67 82.1
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 5.5e-24 114.4 67 80.6
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 7.2e-24 114.0 69 76.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 7.2e-24 114.0 68 77.9
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 9.5e-24 113.6 67 83.6
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 9.5e-24 113.6 67 80.6
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 9.5e-24 113.6 67 85.1
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.2e-23 113.2 67 85.1
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.6e-23 112.8 67 82.1
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.1e-23 112.5 67 80.6
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.1e-23 112.5 67 80.6
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 2.8e-23 112.1 67 80.6
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 3.6e-23 111.7 67 83.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 4.7e-23 111.3 68 77.9
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 4.7e-23 111.3 67 83.6
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 4.7e-23 111.3 67 80.6
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 8.0e-23 110.5 67 80.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 8.0e-23 110.5 67 80.6
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 8.0e-23 110.5 67 80.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 1.0e-22 110.2 67 80.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.0e-22 110.2 67 79.1
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.0e-22 110.2 63 81.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.0e-22 110.2 67 80.6
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.0e-22 110.2 67 79.1
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.4e-22 109.8 67 80.6
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-22 108.6 67 80.6
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 3.0e-22 108.6 67 79.1
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 3.0e-22 108.6 67 77.6
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.0e-22 108.2 67 80.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 4.0e-22 108.2 67 76.1
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 80.6
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 80.6
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 80.6
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 80.6
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 80.6
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 80.6
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 80.6
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 5.2e-22 107.8 67 74.6
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 8.9e-22 107.1 67 77.6
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 79.1
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.2e-21 106.7 71 76.1
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.2e-21 106.7 67 77.6
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.5e-21 106.3 69 73.9
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.5e-21 106.3 67 77.6
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.5e-21 106.3 67 79.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 1.5e-21 106.3 65 78.5
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 2.0e-21 105.9 67 76.1
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.0e-21 105.9 67 79.1
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.6e-21 105.5 69 73.9
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 3.4e-21 105.1 67 76.1
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 4.4e-21 104.8 67 76.1
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-21 104.8 67 76.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.4e-21 104.8 67 76.1
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 4.4e-21 104.8 68 75.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 4.4e-21 104.8 68 69.1
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 5.7e-21 104.4 67 79.1
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 5.7e-21 104.4 67 74.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 5.7e-21 104.4 67 74.6
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 7.5e-21 104.0 67 79.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 7.5e-21 104.0 67 74.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 7.5e-21 104.0 67 74.6
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.3e-20 103.2 67 74.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 1.3e-20 103.2 73 74.0
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-20 102.8 67 77.6
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 2.8e-20 102.1 67 74.6
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 3.7e-20 101.7 68 72.1
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 4.9e-20 101.3 64 76.6
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.9e-20 101.3 64 76.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.1e-19 100.1 68 73.5
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.4e-19 99.8 98 55.1
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.4e-19 99.8 65 73.8
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.4e-19 99.8 68 66.2
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.1e-19 98.6 67 71.6
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 4.1e-19 98.2 55 89.1
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 4.1e-19 98.2 67 70.1
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 7.0e-19 97.4 89 53.9
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 9.2e-19 97.1 67 68.7
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 2.0e-18 95.9 61 68.9
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 7.8e-18 94.0 55 78.2
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.0e-17 93.6 68 67.6
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.3e-17 93.2 55 81.8
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-17 90.9 72 66.7
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-16 89.7 83 60.2
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.9e-16 89.4 55 80.0
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-15 85.9 71 64.8
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 2.8e-15 85.5 55 78.2
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 4.7e-15 84.7 53 77.4
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 2.3e-14 82.4 67 65.7
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.3e-14 82.4 55 74.5
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 3.4e-13 78.6 54 72.2
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.2e-12 75.9 66 62.1
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.9e-12 75.5 82 47.6
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.4e-11 72.4 71 52.1
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 3.2e-11 72.0 84 52.4
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 4.1e-11 71.6 67 55.2
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 2.0e-10 69.3 64 57.8
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.0e-09 67.0 70 48.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.3e-09 66.6 71 52.1
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-09 65.9 74 51.4
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-09 65.5 38 84.2
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 5.0e-09 64.7 39 74.4
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.1e-08 63.5 44 70.5
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.5e-08 63.2 68 50.0
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-08 62.0 45 68.9
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.6e-07 59.7 38 76.3
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.6e-07 59.7 38 76.3
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 2.3e-06 55.8 45 64.4
arahy.Tifrunner.gnm1.ann1.LX64UG Arachis hypogaea HOM05D000103 ORTHO05D084991 6.8e-06 54.3 35 71.4


User provided reference genes

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