Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.0e-107 392.5 206 100.0
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.0e-79 298.9 212 73.6
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.5e-75 285.0 185 75.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.0e-74 283.9 181 77.9
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.0e-74 281.6 181 77.3
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.4e-73 280.0 191 73.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.5e-73 279.3 209 69.9
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 3.2e-73 278.9 193 73.1
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.5e-73 278.1 206 68.4
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.2e-73 277.7 186 72.6
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 6.1e-72 274.6 201 67.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 6.1e-72 274.6 179 75.4
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 7.9e-72 274.2 206 67.5
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.3e-71 272.7 171 77.8
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 3.0e-71 272.3 179 74.9
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.9e-71 271.9 201 68.2
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.1e-70 270.4 206 67.5
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 2.5e-70 269.2 197 69.0
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 3.3e-70 268.9 206 68.0
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.3e-70 268.5 201 67.7
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 9.7e-70 267.3 206 66.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 9.7e-70 267.3 180 72.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.6e-69 266.5 209 67.9
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.2e-69 266.2 169 76.3
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 2.8e-69 265.8 181 72.9
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.7e-69 265.4 176 73.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 6.3e-69 264.6 162 79.6
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.1e-68 263.8 180 70.6
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.1e-68 263.8 169 72.8
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.4e-68 263.5 175 72.6
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 1.4e-68 263.5 204 65.7
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.8e-68 263.1 204 66.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 2.4e-68 262.7 206 67.0
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.1e-68 261.9 167 74.9
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 5.3e-68 261.5 171 71.3
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 6.9e-68 261.2 211 65.9
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.5e-67 260.0 206 66.0
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.5e-67 260.0 185 68.6
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.0e-67 259.6 187 69.0
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.4e-67 258.8 202 66.3
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 3.4e-67 258.8 179 70.4
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 5.9e-67 258.1 198 67.2
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 7.7e-67 257.7 175 69.7
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.3e-66 256.9 204 65.2
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.7e-66 256.5 198 66.7
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.2e-66 256.1 192 64.6
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 5.0e-66 255.0 197 64.5
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.0e-66 255.0 178 68.5
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 6.5e-66 254.6 173 69.9
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 6.5e-66 254.6 212 63.7
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 8.5e-66 254.2 182 68.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.1e-65 253.8 174 71.8
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.4e-65 253.4 178 67.4
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.4e-65 253.4 197 66.5
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.9e-65 253.1 206 64.1
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.9e-65 253.1 174 72.4
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.9e-65 253.1 196 64.3
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.9e-65 253.1 198 66.2
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 4.2e-65 251.9 180 68.3
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 4.2e-65 251.9 178 68.5
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 4.2e-65 251.9 193 66.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 5.5e-65 251.5 184 65.2
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 7.2e-65 251.1 178 66.9
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 9.4e-65 250.8 177 66.7
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.2e-64 250.4 207 61.8
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.2e-64 250.4 202 65.8
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.2e-64 250.4 205 62.0
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.1e-64 249.6 186 66.7
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.1e-64 249.6 196 65.3
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 4.6e-64 248.4 201 61.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 4.6e-64 248.4 201 61.7
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 4.6e-64 248.4 177 68.9
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.1e-64 248.1 201 62.2
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.1e-64 248.1 218 62.8
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.0e-63 247.3 206 63.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.0e-63 247.3 169 71.0
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.8e-63 246.5 159 73.6
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.3e-63 246.1 186 64.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.3e-63 246.1 197 62.9
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 3.9e-63 245.4 176 68.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 3.9e-63 245.4 176 68.8
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 3.9e-63 245.4 182 65.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 5.1e-63 245.0 176 68.8
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 5.1e-63 245.0 176 68.8
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.1e-63 245.0 192 65.1
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.1e-63 245.0 201 62.7
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 6.7e-63 244.6 219 59.8
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.1e-62 243.8 173 69.4
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-62 243.8 180 66.1
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.6e-62 242.7 180 66.1
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 3.3e-62 242.3 201 62.2
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 5.7e-62 241.5 183 65.0
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 9.7e-62 240.7 150 75.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.7e-61 240.0 177 65.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.2e-61 237.7 192 64.1
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-60 237.3 230 59.6
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.4e-60 236.9 172 66.3
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.8e-60 236.5 164 69.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.5e-59 233.4 174 64.4
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.5e-59 233.4 182 63.7
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.4e-59 232.3 197 62.4
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 3.4e-59 232.3 203 59.1
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 4.5e-59 231.9 170 65.3
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.7e-59 231.1 179 64.8
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.0e-58 230.7 166 64.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.7e-58 229.9 172 64.5
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 5.0e-58 228.4 212 56.6
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.0e-58 228.4 156 71.2
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.0e-58 228.4 156 71.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.5e-58 228.0 164 67.1
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.2e-57 225.7 199 58.8
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.6e-56 223.4 187 61.5
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 3.6e-56 222.2 187 61.0
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 7.9e-56 221.1 226 53.1
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.1e-54 217.2 201 56.7
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.1e-54 217.2 202 59.9
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.0e-54 216.5 187 58.3
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.0e-54 216.5 201 56.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.4e-54 215.3 185 59.5
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.8e-53 211.8 142 71.1
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.5e-50 201.4 207 55.1
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.6e-48 196.8 166 59.0
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.3e-47 193.0 183 54.6
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.7e-47 191.4 164 57.9
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.5e-46 190.3 217 49.3
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 5.7e-46 188.3 173 53.2
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.2e-45 186.4 183 53.0
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 2.8e-45 186.0 167 56.3
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 4.2e-41 172.2 151 55.0
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.6e-38 162.9 170 48.8
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.4e-36 157.1 176 48.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.0e-35 153.3 173 45.1
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 3.5e-35 152.5 103 72.8
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.1e-33 147.5 126 58.7
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.5e-33 147.1 125 58.4
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.9e-33 146.7 99 68.7
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.1e-32 143.3 93 71.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.7e-32 142.1 99 69.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.8e-31 140.2 139 50.4
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.0e-31 139.0 121 57.9
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.2e-30 137.5 120 59.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.5e-30 137.1 100 64.0
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.9e-26 122.9 108 60.2
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 8.6e-26 121.3 108 56.5
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.5e-25 119.8 80 72.5
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.7e-21 107.1 82 65.9
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 2.4e-20 103.2 68 75.0
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.5e-19 99.4 173 39.9
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 8.9e-15 84.7 63 69.8
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 4.4e-14 82.4 135 33.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 4.9e-13 79.0 76 56.6
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.5e-09 66.6 49 65.3
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 5.6e-09 65.5 46 69.6
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.6e-09 65.5 96 41.7
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.1e-08 63.5 43 67.4
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 2.8e-08 63.2 63 47.6


User provided reference genes

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