Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.3e-96 355.5 174 100.0
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 8.7e-80 300.4 174 82.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 5.6e-79 297.7 173 80.3
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 5.6e-79 297.7 174 81.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 9.6e-79 297.0 174 81.6
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.8e-78 294.7 173 79.2
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.8e-78 294.7 173 80.3
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 6.2e-78 294.3 173 80.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.1e-77 293.5 174 79.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-77 292.7 173 79.2
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.4e-77 292.4 173 78.6
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.4e-77 292.4 173 79.2
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.4e-77 292.4 170 80.6
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.1e-77 292.0 164 82.9
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 5.3e-77 291.2 173 79.8
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 6.9e-77 290.8 175 80.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.5e-76 289.7 173 78.0
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.6e-76 288.9 173 78.0
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.6e-76 288.9 171 78.4
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 3.4e-76 288.5 173 79.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.5e-76 288.1 173 78.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.0e-75 287.0 174 78.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.0e-75 287.0 174 78.2
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.0e-75 287.0 174 78.7
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.3e-75 286.6 173 76.3
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.7e-75 286.2 173 78.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.9e-75 285.4 172 77.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.9e-75 285.4 173 76.3
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.8e-75 285.0 173 76.9
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.8e-75 285.0 173 74.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 4.9e-75 284.6 173 78.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.9e-75 284.6 173 77.5
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 6.5e-75 284.3 171 77.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 6.5e-75 284.3 173 76.3
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 6.5e-75 284.3 171 77.2
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.1e-74 283.5 173 75.1
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.9e-74 282.7 173 76.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.9e-74 282.7 173 75.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.9e-74 282.7 171 77.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.5e-74 282.3 173 73.4
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.2e-74 282.0 175 77.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.2e-74 282.0 173 74.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.2e-74 281.6 173 74.6
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 5.5e-74 281.2 171 75.4
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 5.5e-74 281.2 173 75.7
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.5e-74 281.2 173 75.7
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 7.1e-74 280.8 173 75.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 7.1e-74 280.8 173 76.9
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-73 280.0 160 83.1
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.6e-73 279.6 173 75.1
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.1e-73 279.3 171 75.4
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.1e-73 279.3 180 74.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 72.8
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 73.4
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 73.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.1e-73 279.3 173 73.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.5e-73 278.5 171 74.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 6.0e-73 277.7 173 72.8
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.0e-72 276.9 171 74.9
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.3e-72 276.6 173 72.3
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.3e-72 276.6 171 74.3
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.8e-72 276.2 173 75.1
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 1.8e-72 276.2 174 71.8
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 3.9e-72 275.0 171 73.7
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 5.1e-72 274.6 156 83.3
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 6.7e-72 274.2 171 73.1
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 6.7e-72 274.2 171 73.1
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.7e-72 274.2 175 74.9
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 8.7e-72 273.9 171 73.1
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 8.7e-72 273.9 171 73.1
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.1e-71 273.5 174 74.1
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.9e-71 272.7 173 74.0
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.3e-71 271.9 173 74.6
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.7e-71 271.2 173 72.8
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.3e-70 270.0 171 76.0
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.3e-70 270.0 162 79.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.8e-70 268.9 174 73.0
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.7e-70 268.5 173 69.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 3.7e-70 268.5 171 74.3
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.1e-69 266.9 170 72.9
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.8e-69 266.2 173 75.1
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.8e-69 266.2 170 73.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.4e-69 265.8 163 79.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 6.9e-69 264.2 174 71.8
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 6.9e-69 264.2 173 71.1
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 9.0e-69 263.8 174 71.8
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.2e-68 263.5 166 75.9
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.5e-68 263.1 174 75.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.0e-68 262.7 162 77.2
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.0e-68 262.7 170 73.5
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.0e-68 262.7 163 77.3
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.4e-68 261.9 171 71.3
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.9e-68 261.2 173 66.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.0e-67 260.4 175 72.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.0e-67 260.4 163 72.4
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.7e-67 259.6 170 72.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 5.0e-67 258.1 164 75.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.5e-67 257.7 177 74.0
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 8.5e-67 257.3 175 69.7
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 4.2e-66 255.0 173 71.7
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 9.3e-66 253.8 163 73.0
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.2e-65 253.4 168 71.4
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.6e-65 253.1 164 73.2
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.6e-65 253.1 164 73.2
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.1e-65 252.7 168 73.8
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.7e-65 252.3 172 70.9
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 3.6e-65 251.9 171 66.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.1e-65 251.1 170 67.1
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.3e-64 250.0 168 73.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.8e-64 249.6 170 68.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.0e-64 248.8 170 67.6
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.0e-64 248.8 165 69.1
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.1e-64 248.1 164 72.0
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 5.1e-64 248.1 163 72.4
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 6.7e-64 247.7 175 70.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.5e-63 246.5 164 71.3
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.5e-63 246.5 164 71.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.9e-63 246.1 170 69.4
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 2.5e-63 245.7 172 68.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.3e-63 245.0 162 71.0
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-61 240.4 170 67.6
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.4e-61 240.0 162 71.6
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 5.3e-61 238.0 164 68.9
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 6.9e-61 237.7 176 67.6
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.2e-60 236.9 168 66.1
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.2e-60 236.9 134 79.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 5.9e-60 234.6 165 66.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 5.0e-59 231.5 170 62.9
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.1e-58 230.3 134 76.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.5e-58 229.2 170 62.9
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.1e-57 226.1 170 62.4
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-57 226.1 168 66.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.8e-56 223.0 175 63.4
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.3e-56 222.6 165 67.3
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.3e-56 222.6 165 67.3
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.9e-56 221.9 139 72.7
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.8e-56 220.7 168 65.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 3.3e-55 218.8 173 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 2.4e-53 212.6 160 62.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.1e-53 210.7 182 59.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.4e-52 208.8 163 61.3
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-51 206.8 161 62.7
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.3e-51 206.8 136 77.2
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.9e-51 205.7 140 72.9
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.8e-51 205.3 159 62.9
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 3.8e-51 205.3 157 59.2
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 8.5e-51 204.1 159 59.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.2e-50 201.8 172 58.1
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.5e-50 201.4 161 64.0
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.7e-49 198.4 161 64.6
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-48 197.2 156 60.3
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.3e-48 196.1 169 59.8
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.3e-48 196.1 129 76.7
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.1e-47 193.7 143 64.3
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.4e-47 191.8 180 57.8
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.2e-46 189.5 180 57.2
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 2.8e-46 189.1 153 57.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 3.7e-46 188.7 164 57.9
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.4e-45 186.8 129 72.1
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.0e-43 180.6 164 55.5
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.9e-42 176.4 142 57.0
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.7e-41 171.8 129 65.1
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-39 166.4 116 71.6
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 7.7e-36 154.5 90 80.0
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.9e-34 149.8 94 69.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.2e-33 147.1 91 70.3
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.0e-32 142.5 99 70.7
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.0e-32 142.5 93 74.2
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.5e-28 129.0 154 40.3
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 4.2e-26 122.1 174 43.7
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 7.5e-23 111.3 72 72.2
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-16 90.9 79 54.4
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 6.8e-16 88.2 52 75.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.8e-13 80.1 53 71.7
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 9.2e-13 77.8 106 45.3
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.3e-11 73.2 174 31.0
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-09 67.0 36 80.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 2.1e-09 66.6 36 77.8
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 4.0e-08 62.4 172 30.2
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 5.2e-08 62.0 80 42.5
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-06 57.4 36 66.7
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.3e-06 57.4 64 39.1


User provided reference genes

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