Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 2.2e-74 282.3 156 100.0
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 4.8e-61 238.0 150 86.7
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.8e-60 236.1 150 85.3
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 1.8e-60 236.1 152 85.5
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 1.5e-59 233.0 146 86.3
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 1.9e-57 226.1 147 84.4
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 2.4e-57 225.7 154 80.5
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 3.2e-57 225.3 147 84.4
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 2.1e-56 222.6 147 83.0
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 3.5e-56 221.9 147 82.3
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 6.0e-56 221.1 149 80.5
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 7.9e-56 220.7 150 80.7
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 3.0e-55 218.8 146 80.8
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 6.7e-55 217.6 150 80.0
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 6.7e-55 217.6 150 80.0
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 6.7e-55 217.6 147 78.9
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 6.7e-55 217.6 147 79.6
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 6.7e-55 217.6 152 77.0
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 1.5e-54 216.5 139 85.6
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 1.5e-54 216.5 147 78.9
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.5e-54 216.5 152 79.6
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 1.5e-54 216.5 148 81.1
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 1.9e-54 216.1 147 79.6
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 2.5e-54 215.7 147 79.6
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 2.5e-54 215.7 147 80.3
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 3.3e-54 215.3 148 79.7
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 4.3e-54 214.9 149 80.5
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 4.3e-54 214.9 146 80.1
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 4.3e-54 214.9 145 80.7
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 7.4e-54 214.2 148 79.7
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 7.4e-54 214.2 148 79.1
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 9.6e-54 213.8 146 80.1
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 9.6e-54 213.8 146 80.1
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 9.6e-54 213.8 147 78.2
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 9.6e-54 213.8 139 84.2
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 1.6e-53 213.0 147 79.6
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 2.1e-53 212.6 146 79.5
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 3.7e-53 211.8 148 78.4
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 3.7e-53 211.8 145 79.3
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 4.8e-53 211.5 151 74.2
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 4.8e-53 211.5 150 77.3
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 4.8e-53 211.5 148 79.1
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 6.2e-53 211.1 146 78.8
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 6.2e-53 211.1 146 78.8
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 6.2e-53 211.1 146 78.8
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 8.1e-53 210.7 148 75.0
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 8.1e-53 210.7 151 74.2
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 8.1e-53 210.7 147 78.2
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 1.1e-52 210.3 151 73.5
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 1.4e-52 209.9 151 73.5
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 1.4e-52 209.9 151 73.5
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 1.4e-52 209.9 151 73.5
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 1.4e-52 209.9 151 72.8
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 1.4e-52 209.9 151 74.2
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 1.4e-52 209.9 151 73.5
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 1.4e-52 209.9 151 73.5
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 2.4e-52 209.1 149 76.5
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 5.3e-52 208.0 151 73.5
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 6.9e-52 207.6 140 80.7
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 6.9e-52 207.6 161 73.9
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 6.9e-52 207.6 153 76.5
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 9.0e-52 207.2 151 73.5
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 1.5e-51 206.5 150 74.7
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 2.6e-51 205.7 145 74.5
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 2.6e-51 205.7 151 72.2
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 2.6e-51 205.7 147 78.2
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 3.4e-51 205.3 147 77.6
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 4.5e-51 204.9 148 77.0
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 9.9e-51 203.8 153 75.2
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 1.7e-50 203.0 146 74.7
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 2.2e-50 202.6 148 77.0
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 4.9e-50 201.4 151 70.9
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 6.4e-50 201.1 148 73.6
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 6.4e-50 201.1 148 73.6
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 8.4e-50 200.7 149 76.5
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 1.1e-49 200.3 147 74.8
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 1.1e-49 200.3 126 85.7
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.4e-49 199.9 147 74.1
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 1.4e-49 199.9 148 75.7
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 5.5e-49 198.0 141 76.6
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 5.5e-49 198.0 141 76.6
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 2.1e-48 196.1 149 70.5
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 6.7e-47 191.0 147 70.1
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 8.7e-47 190.7 145 69.7
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 1.5e-46 189.9 139 71.9
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 2.5e-46 189.1 143 70.6
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 1.3e-45 186.8 143 69.9
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 6.2e-45 184.5 147 72.1
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 1.5e-43 179.9 151 65.6
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 2.0e-43 179.5 148 70.9
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 3.4e-43 178.7 150 70.0
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 4.9e-42 174.9 149 67.8
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 6.5e-42 174.5 143 67.1
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 1.2e-40 170.2 147 67.3
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 2.7e-40 169.1 226 50.0
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 1.1e-38 163.7 146 67.1
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 1.1e-38 163.7 113 80.5
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 3.3e-38 162.2 112 80.4
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 2.8e-37 159.1 116 77.6
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 3.7e-37 158.7 146 64.4
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 8.2e-37 157.5 145 60.7
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 5.3e-36 154.8 150 64.0
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 1.5e-35 153.3 150 62.0
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 1.7e-34 149.8 146 52.7
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 1.2e-32 143.7 146 51.4
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 2.7e-32 142.5 112 69.6
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 2.7e-32 142.5 110 71.8
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 2.7e-32 142.5 151 57.6
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 3.6e-32 142.1 147 61.2
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 1.1e-30 137.1 109 72.5
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.5e-30 136.7 144 58.3
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 9.7e-30 134.0 118 65.3
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 2.8e-29 132.5 104 71.2
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 4.8e-29 131.7 168 53.0
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 9.1e-28 127.5 147 57.1
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 7.7e-27 124.4 91 74.7
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 7.7e-27 124.4 137 46.7
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 1.4e-25 120.2 147 55.1
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.2e-24 117.1 81 80.2
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.6e-24 116.7 147 53.7
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 1.6e-24 116.7 147 53.7
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 4.8e-21 105.1 125 54.4
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 1.2e-16 90.5 65 73.8
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 8.2e-13 77.8 137 38.0
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 1.6e-11 73.6 53 73.6
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 5.5e-09 65.1 126 38.1
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 7.2e-09 64.7 74 48.6
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 1.6e-08 63.5 137 31.4
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 2.7e-08 62.8 41 73.2


User provided reference genes

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