Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 5.9e-144 514.2 266 100.0
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 2.6e-115 419.1 266 78.9
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 7.5e-115 417.5 266 77.8
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 6.3e-114 414.5 251 82.5
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.4e-113 412.5 267 77.9
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 4.1e-113 411.8 257 77.8
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 5.4e-113 411.4 266 77.8
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 7.0e-113 411.0 266 77.1
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 3.5e-112 408.7 266 76.3
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 7.7e-112 407.5 266 78.6
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 7.7e-112 407.5 251 81.3
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.9e-111 405.6 269 76.2
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 6.5e-111 404.4 267 74.9
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.5e-111 404.4 259 78.4
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.5e-110 403.3 266 74.4
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 1.9e-110 402.9 257 77.4
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 3.2e-110 402.1 266 75.6
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 5.5e-110 401.4 266 75.6
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 9.5e-110 400.6 266 73.7
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 1.2e-109 400.2 266 75.9
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 4.7e-109 398.3 266 74.8
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.0e-108 397.1 286 71.7
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 1.4e-108 396.7 256 76.6
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 6.8e-108 394.4 243 81.5
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 6.8e-108 394.4 247 78.1
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 8.8e-108 394.0 270 73.0
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 8.8e-108 394.0 271 73.8
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 1.2e-107 393.7 266 74.4
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.5e-107 393.3 269 75.8
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 3.4e-107 392.1 270 72.6
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 5.7e-107 391.3 266 73.3
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 7.5e-107 391.0 262 74.4
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 9.8e-107 390.6 266 75.2
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 9.8e-107 390.6 256 75.4
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.3e-106 390.2 250 76.8
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 2.8e-106 389.0 249 77.5
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 3.7e-106 388.7 266 73.3
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 6.3e-106 387.9 266 73.3
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 8.3e-106 387.5 266 72.6
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.1e-105 387.1 266 72.6
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 1.4e-105 386.7 266 72.6
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.4e-105 386.7 266 72.6
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 3.1e-105 385.6 267 73.0
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 3.1e-105 385.6 262 72.5
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 3.1e-105 385.6 255 74.5
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 7.0e-105 384.4 261 72.8
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 7.0e-105 384.4 258 72.9
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 9.2e-105 384.0 264 75.4
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.2e-104 383.6 266 73.7
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 1.2e-104 383.6 267 73.0
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.2e-104 383.6 253 76.3
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 1.6e-104 383.3 245 78.0
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.0e-104 382.9 303 66.3
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 3.5e-104 382.1 266 72.2
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 3.5e-104 382.1 266 70.3
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 4.5e-104 381.7 265 72.1
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 7.8e-104 380.9 278 70.1
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 1.0e-103 380.6 245 77.6
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 1.0e-103 380.6 264 73.1
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.3e-103 379.4 336 62.8
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 2.3e-103 379.4 267 72.7
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 5.0e-103 378.3 266 71.1
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 8.6e-103 377.5 229 81.2
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 1.9e-102 376.3 235 79.1
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 2.5e-102 375.9 234 77.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.3e-102 375.2 282 69.1
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 5.6e-102 374.8 240 76.2
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 5.6e-102 374.8 248 73.0
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 7.3e-102 374.4 244 75.8
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 9.5e-102 374.0 259 73.0
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 9.5e-102 374.0 268 72.0
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 9.5e-102 374.0 235 80.9
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.6e-101 373.2 266 72.9
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 2.8e-101 372.5 256 73.4
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.7e-101 371.7 273 71.1
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 6.8e-100 367.9 234 77.4
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.0e-99 366.3 251 72.1
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 5.7e-99 364.8 250 72.0
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 9.8e-99 364.0 230 77.4
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.7e-98 363.2 267 70.4
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 2.2e-98 362.8 245 71.8
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 4.9e-98 361.7 258 67.1
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 8.3e-98 360.9 267 70.8
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 1.1e-97 360.5 213 83.1
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.4e-97 360.1 265 67.2
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 2.4e-97 359.4 336 58.0
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 4.1e-97 358.6 253 71.9
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 9.2e-97 357.5 257 68.9
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.2e-96 357.1 245 70.6
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 1.2e-96 357.1 254 68.9
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 3.5e-96 355.5 260 68.5
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 5.9e-96 354.8 230 75.7
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 1.0e-95 354.0 252 69.4
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.7e-95 353.2 254 68.9
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 3.9e-95 352.1 247 70.4
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 6.6e-95 351.3 247 70.0
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.9e-94 349.7 257 67.7
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.5e-94 349.4 251 68.1
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 2.5e-94 349.4 254 68.9
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 2.5e-94 349.4 267 66.3
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 3.3e-94 349.0 254 68.1
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 3.3e-94 349.0 254 68.9
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 3.3e-94 349.0 254 68.1
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 4.3e-94 348.6 221 76.9
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 4.3e-94 348.6 245 71.0
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 5.6e-94 348.2 254 67.3
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 2.1e-93 346.3 285 62.1
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 2.1e-93 346.3 260 66.5
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 2.1e-93 346.3 274 65.0
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 2.1e-93 346.3 254 66.9
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 3.6e-93 345.5 213 79.3
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 4.7e-93 345.1 247 68.4
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 6.2e-93 344.7 260 67.7
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.1e-92 344.0 266 68.0
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 1.8e-92 343.2 213 78.9
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 1.8e-92 343.2 262 65.6
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 5.2e-92 341.7 221 77.8
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.2e-91 340.5 250 68.8
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.4e-89 333.6 267 63.3
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 2.4e-89 332.8 252 65.9
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 7.8e-88 327.8 249 69.5
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.0e-87 327.4 252 63.1
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 5.0e-87 325.1 265 65.3
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 8.6e-87 324.3 253 68.0
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 8.6e-87 324.3 212 76.9
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 8.9e-84 314.3 247 64.8
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.6e-83 312.8 263 65.0
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 1.3e-82 310.5 275 61.1
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.1e-81 307.4 248 62.5
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 3.5e-80 302.4 238 62.6
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.5e-80 302.4 185 80.0
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.0e-79 300.8 204 72.5
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.9e-79 298.9 206 73.8
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 6.6e-79 298.1 184 82.6
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 1.1e-78 297.4 266 60.5
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 3.3e-78 295.8 305 54.1
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.4e-75 285.4 196 77.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 9.9e-75 284.3 243 59.3
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 4.9e-74 282.0 258 55.0
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 7.8e-72 274.6 258 54.7
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 3.6e-69 265.8 234 57.7
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 3.6e-69 265.8 200 63.5
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.1e-68 264.2 248 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 9.0e-68 261.2 257 53.3
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 5.8e-67 258.5 252 52.8
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 1.9e-65 253.4 181 68.5
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.1e-62 244.2 146 83.6
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.8e-59 231.9 207 63.3
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 3.2e-57 226.1 139 77.7
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 7.9e-56 221.5 234 48.7
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 1.0e-55 221.1 244 48.0
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 6.2e-53 211.8 194 59.3
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.4e-49 199.9 166 65.1
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.6e-45 187.2 122 77.0
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.9e-41 173.7 105 82.9
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.2e-41 172.9 104 76.9
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.9e-39 166.0 100 85.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.4e-36 156.8 148 61.5
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 1.9e-33 147.1 243 37.9
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.8e-31 140.6 99 74.7
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 4.8e-29 132.5 118 60.2
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 4.8e-29 132.5 118 60.2
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.1e-25 121.3 184 42.9
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 2.1e-24 117.1 82 72.0
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.4e-23 114.4 174 42.0
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 9.1e-20 101.7 157 41.4
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 1.3e-18 97.8 66 66.7
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.1e-17 94.7 84 60.7
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 1.2e-16 91.3 281 26.7
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.1e-16 90.5 68 66.2
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 8.8e-15 85.1 64 67.2
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 8.5e-10 68.6 240 25.4
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.2e-08 64.7 126 38.9
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 8.0e-08 62.0 45 57.8
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.2e-06 58.2 38 73.7


User provided reference genes

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