Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 5.5e-119 431.0 226 100.0
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.6e-81 306.6 224 70.1
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 2.1e-81 306.2 224 70.1
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 2.4e-77 292.7 224 69.2
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 2.0e-76 289.7 223 68.2
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.7e-75 286.6 237 63.3
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 2.2e-75 286.2 224 66.1
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 1.1e-74 283.9 236 64.0
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 1.4e-74 283.5 239 63.2
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 9.3e-74 280.8 218 67.0
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 4.6e-73 278.5 236 63.6
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 7.9e-73 277.7 236 65.3
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 3.0e-72 275.8 184 76.6
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 5.6e-71 271.6 235 63.8
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 7.3e-71 271.2 237 62.4
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.3e-70 270.4 237 62.9
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 2.1e-70 269.6 227 66.1
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 2.8e-70 269.2 233 63.5
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 2.8e-70 269.2 236 61.9
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 4.8e-70 268.5 242 62.4
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 8.1e-70 267.7 237 61.6
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 1.8e-69 266.5 238 61.8
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 1.8e-69 266.5 240 60.8
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 3.1e-69 265.8 224 61.6
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 5.3e-69 265.0 177 75.1
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.2e-68 263.8 227 65.2
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.2e-68 263.8 237 60.8
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 1.5e-68 263.5 238 60.5
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 2.0e-68 263.1 241 60.6
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 2.0e-68 263.1 238 60.5
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.0e-68 263.1 225 63.6
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 3.4e-68 262.3 209 66.5
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 3.4e-68 262.3 239 60.7
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 5.8e-68 261.5 178 74.2
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 7.6e-68 261.2 233 60.5
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 7.6e-68 261.2 234 63.2
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.3e-67 260.4 234 62.4
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 2.2e-67 259.6 200 68.0
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 2.2e-67 259.6 200 69.5
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 2.9e-67 259.2 194 69.1
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 2.9e-67 259.2 180 72.2
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 2.9e-67 259.2 176 75.0
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 4.9e-67 258.5 238 61.3
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 4.9e-67 258.5 240 59.6
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 4.9e-67 258.5 176 72.2
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 6.4e-67 258.1 244 60.2
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 6.4e-67 258.1 234 62.8
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 1.9e-66 256.5 216 64.8
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.9e-66 256.5 222 61.3
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.4e-66 256.1 238 60.9
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 3.2e-66 255.8 200 67.0
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.2e-66 255.8 238 60.9
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 4.2e-66 255.4 239 59.4
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 5.5e-66 255.0 227 63.0
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 7.1e-66 254.6 178 71.9
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 1.6e-65 253.4 162 77.8
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 2.1e-65 253.1 180 70.6
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 2.7e-65 252.7 238 60.5
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 2.7e-65 252.7 231 61.9
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 2.7e-65 252.7 239 59.4
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 6.0e-65 251.5 209 63.6
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 6.0e-65 251.5 238 58.0
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 7.9e-65 251.1 238 59.2
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.0e-64 250.8 235 60.4
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 1.3e-64 250.4 233 59.7
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 1.3e-64 250.4 241 59.8
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 2.3e-64 249.6 245 59.6
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 2.3e-64 249.6 229 60.3
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 3.0e-64 249.2 245 59.2
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 3.0e-64 249.2 239 59.8
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 5.1e-64 248.4 208 64.4
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 6.7e-64 248.1 176 70.5
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 6.7e-64 248.1 232 61.2
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 6.7e-64 248.1 232 61.2
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 6.7e-64 248.1 202 65.8
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 1.1e-63 247.3 262 55.0
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 1.1e-63 247.3 222 60.4
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.1e-63 247.3 180 69.4
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 1.1e-63 247.3 233 60.5
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.5e-63 246.9 231 60.6
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 2.5e-63 246.1 253 57.3
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 2.5e-63 246.1 202 65.3
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 5.6e-63 245.0 240 58.8
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 5.6e-63 245.0 219 60.3
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 1.6e-62 243.4 240 58.3
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.6e-62 243.4 208 63.5
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 2.1e-62 243.0 176 70.5
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 3.7e-62 242.3 236 57.6
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 8.1e-62 241.1 236 59.3
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 1.4e-61 240.4 240 57.9
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 1.4e-61 240.4 239 58.2
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 2.4e-61 239.6 223 58.7
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 2.4e-61 239.6 164 73.2
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 5.3e-61 238.4 236 55.9
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 5.3e-61 238.4 236 55.1
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 9.0e-61 237.7 180 68.9
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.5e-60 236.9 237 58.2
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 5.8e-60 235.0 258 52.3
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 2.2e-59 233.0 162 72.2
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 3.8e-59 232.3 221 58.8
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 6.5e-59 231.5 172 67.4
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 1.4e-58 230.3 176 65.9
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 2.5e-58 229.6 211 61.1
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 2.5e-58 229.6 182 63.7
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 3.2e-58 229.2 211 61.1
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 4.2e-58 228.8 163 71.2
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 4.2e-58 228.8 208 62.5
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 7.1e-58 228.0 187 62.0
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 2.1e-57 226.5 197 64.5
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 2.1e-57 226.5 176 64.2
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 3.5e-57 225.7 211 60.2
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 4.6e-57 225.3 200 60.0
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 4.6e-57 225.3 186 63.4
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 7.9e-57 224.6 172 69.2
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 1.0e-56 224.2 177 66.1
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 1.8e-56 223.4 186 63.4
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 2.3e-56 223.0 226 57.1
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 5.1e-56 221.9 197 62.4
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 5.1e-56 221.9 172 67.4
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 5.1e-56 221.9 197 62.4
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 5.1e-56 221.9 172 67.4
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 1.1e-55 220.7 203 60.6
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 2.5e-55 219.5 197 61.9
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 2.5e-55 219.5 162 68.5
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 3.3e-55 219.2 162 71.0
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 3.3e-55 219.2 174 66.7
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 4.8e-54 215.3 196 55.6
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 6.5e-51 204.9 162 63.6
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 2.3e-48 196.4 150 63.3
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 2.2e-46 189.9 176 59.7
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 5.3e-45 185.3 180 59.4
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.5e-44 183.7 160 61.9
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 2.0e-44 183.3 142 65.5
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 1.0e-43 181.0 170 55.3
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 2.7e-41 172.9 178 51.7
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 2.7e-41 172.9 113 74.3
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.0e-40 171.0 176 51.7
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 6.9e-37 158.3 173 49.7
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.9e-34 150.2 112 73.2
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 5.1e-32 142.1 112 66.1
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 5.7e-31 138.7 228 40.4
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 2.8e-30 136.3 177 44.6
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 4.5e-28 129.0 134 54.5
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 3.8e-27 125.9 84 70.2
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 4.2e-26 122.5 154 48.7
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 2.9e-19 99.8 72 65.3
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.9e-18 97.1 119 50.4
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 6.8e-16 88.6 178 34.8
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 3.8e-11 72.8 70 58.6
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 6.5e-11 72.0 78 50.0
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 2.1e-09 67.0 193 30.6
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 4.7e-09 65.9 57 61.4
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 6.1e-09 65.5 52 67.3
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 5.2e-08 62.4 46 71.7
Peaxi162Scf00017g03138 Petunia axillaris HOM05D000764 ORTHO05D002819 1.3e-06 57.8 162 27.2
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 3.7e-06 56.2 162 27.2
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 3.7e-06 56.2 162 27.2
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 4.9e-06 55.8 162 28.4
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 4.9e-06 55.8 199 26.6
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 8.3e-06 55.1 162 27.8
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 8.3e-06 55.1 162 29.0
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 8.3e-06 55.1 162 26.5


User provided reference genes

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