Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006280 Simmondsia chinensis HOM05D003252 ORTHO05D003640 1.8e-122 442.6 223 100.0
Ah.01g023250 Amaranthus hybridus HOM05D003252 ORTHO05D003640 4.7e-38 162.2 224 45.5
AUR62010009 Chenopodium quinoa HOM05D003252 ORTHO05D003640 1.1e-37 161.0 223 46.2
AUR62013000 Chenopodium quinoa HOM05D003252 ORTHO05D003640 3.1e-37 159.5 223 45.3
EL10Ac9g21338 Beta vulgaris HOM05D003252 ORTHO05D003640 1.9e-34 150.2 224 43.8
MD15G1215300 Malus domestica HOM05D003252 ORTHO05D003640 7.6e-28 128.3 233 37.3
Rhsim03G0229500 Rhododendron simsii HOM05D003252 ORTHO05D003640 3.8e-27 125.9 225 35.1
TAR636G0880 Trochodendron aralioides HOM05D003252 ORTHO05D003640 1.9e-26 123.6 220 35.5
Manes.03G039000 Manihot esculenta HOM05D003252 ORTHO05D003640 5.4e-26 122.1 222 34.7
vmacro06324 Vaccinium macrocarpon HOM05D003252 ORTHO05D003640 5.4e-26 122.1 221 34.4
Lj7C684T2 Lonicera japonica HOM05D003252 ORTHO05D003640 7.9e-25 118.2 224 35.3
Manes.16G097000 Manihot esculenta HOM05D003252 ORTHO05D003640 7.9e-25 118.2 221 34.8
Dinv25571 Davidia involucrata HOM05D003252 ORTHO05D003640 1.3e-24 117.5 236 33.9
CANSAT56G4065 Cannabis sativa HOM05D003252 ORTHO05D003640 3.9e-24 115.9 233 36.1
Hma1.2p1_0797F.1_g219490 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 3.9e-24 115.9 224 34.4
FvH4_1g08350 Fragaria vesca HOM05D003252 ORTHO05D003640 5.1e-24 115.5 223 35.9
FAN19G2299 Fragaria x ananassa HOM05D003252 ORTHO05D003640 5.1e-24 115.5 223 35.9
TWI63G0970 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 6.7e-24 115.2 226 36.3
Nn6g35602 Nelumbo nucifera HOM05D003252 ORTHO05D003640 8.7e-24 114.8 225 35.6
CANSAT46G0002 Cannabis sativa HOM05D003252 ORTHO05D003640 1.1e-23 114.4 233 35.6
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.1e-23 114.4 223 36.3
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.5e-23 114.0 219 36.5
Hma1.2p1_0169F.1_g074670 Hydrangea macrophylla HOM05D003252 ORTHO05D003640 1.9e-23 113.6 224 35.7
Nitab4.5_0000343g0050 Nicotiana tabacum HOM05D003252 ORTHO05D003640 1.9e-23 113.6 223 35.0
Peaxi162Scf00128g00142 Petunia axillaris HOM05D003252 ORTHO05D003640 2.5e-23 113.2 223 34.1
TWI32G0380 Tripterygium wilfordii HOM05D003252 ORTHO05D003640 3.3e-23 112.8 229 37.1
Potri.001G413500 Populus trichocarpa HOM05D003252 ORTHO05D003640 4.3e-23 112.5 233 32.6
Prupe.7G202000 Prunus persica HOM05D003252 ORTHO05D003640 4.3e-23 112.5 223 35.4
ClCG11G001480 Citrullus lanatus HOM05D003252 ORTHO05D003640 1.6e-22 110.5 220 34.1
PGR044G0627 Punica granatum HOM05D003252 ORTHO05D003640 2.1e-22 110.2 237 32.9
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 6.2e-22 108.6 224 33.0
Actinidia30206 Actinidia chinensis HOM05D000061 ORTHO05D000050 8.1e-22 108.2 229 32.8
Cc06_g11990 Coffea canephora HOM05D003252 ORTHO05D003640 1.4e-21 107.5 219 34.2
Lalb_Chr13g0299531 Lupinus albus HOM05D003252 ORTHO05D003640 1.8e-21 107.1 222 32.4
Sopen07g021020 Solanum pennellii HOM05D003252 ORTHO05D003640 2.4e-21 106.7 218 33.5
CsaV3_2G001200 Cucumis sativus L. HOM05D003252 ORTHO05D003640 3.1e-21 106.3 220 33.2
RcHm_v2.0_Chr2g0094401 Rosa chinensis HOM05D003252 ORTHO05D003640 3.1e-21 106.3 229 35.8
PGSC0003DMG400019568 Solanum tuberosum HOM05D003252 ORTHO05D003640 3.1e-21 106.3 218 33.9
CSS0012521 Camellia sinensis var. sinensis HOM05D003252 ORTHO05D003640 4.0e-21 105.9 229 32.8
CAN.G198.16 Capsicum annuum HOM05D003252 ORTHO05D003640 4.0e-21 105.9 218 33.0
Solyc07g041490.3 Solanum lycopersicum HOM05D003252 ORTHO05D003640 4.0e-21 105.9 218 33.5
Sabra16G0278400 Salix brachista HOM05D003252 ORTHO05D003640 5.3e-21 105.5 233 31.3
arahy.Tifrunner.gnm1.ann1.25CQ7A Arachis hypogaea HOM05D003252 ORTHO05D003640 6.9e-21 105.1 231 33.8
MELO3C004648.2 Cucumis melo HOM05D003252 ORTHO05D003640 6.9e-21 105.1 218 32.6
AUR62016411 Chenopodium quinoa HOM05D003252 ORTHO05D003640 9.0e-21 104.8 230 34.8
GSVIVG01015103001 Vitis vinifera HOM05D003252 ORTHO05D003640 9.0e-21 104.8 222 32.0
arahy.Tifrunner.gnm1.ann1.B65556 Arachis hypogaea HOM05D003252 ORTHO05D003640 1.2e-20 104.4 230 33.0
Dinv42374 Davidia involucrata HOM05D003252 ORTHO05D003640 1.2e-20 104.4 215 32.6
Sabra16G0273800 Salix brachista HOM05D003252 ORTHO05D003640 1.2e-20 104.4 233 30.9
Sabra16G0274300 Salix brachista HOM05D003252 ORTHO05D003640 1.2e-20 104.4 233 30.9
Oeu010808.1 Olea europaea HOM05D003252 ORTHO05D003640 1.5e-20 104.0 222 33.3
Aqoxy7G04125 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 2.6e-20 103.2 221 33.0
Potri.011G125701 Populus trichocarpa HOM05D003252 ORTHO05D003640 2.6e-20 103.2 221 32.6
vmacro06325 Vaccinium macrocarpon HOM05D003252 ORTHO05D003640 2.6e-20 103.2 221 31.2
COL.COLO4_18119 Corchorus olitorius HOM05D003252 ORTHO05D003640 7.6e-20 101.7 224 32.6
FAN28G0807 Fragaria x ananassa HOM05D003252 ORTHO05D003640 7.6e-20 101.7 223 33.6
Peaxi162Scf00073g00132 Petunia axillaris HOM05D003252 ORTHO05D003640 7.6e-20 101.7 211 32.7
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 9.9e-20 101.3 232 32.8
FAN28G2135 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.3e-19 100.9 199 37.2
QL02p060735 Quercus lobata HOM05D003252 ORTHO05D003640 1.3e-19 100.9 238 32.4
Sed0020871 Sechium edule HOM05D003252 ORTHO05D003640 1.3e-19 100.9 240 30.0
THA.LOC104815326 Tarenaya hassleriana HOM05D003252 ORTHO05D003640 1.3e-19 100.9 229 32.3
FAN19G3090 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.7e-19 100.5 223 33.2
AUR62011596 Chenopodium quinoa HOM05D003252 ORTHO05D003640 2.2e-19 100.1 224 34.4
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 2.2e-19 100.1 232 32.3
Glyma.13G108800 Glycine max HOM05D003252 ORTHO05D003640 2.2e-19 100.1 221 33.0
Atru.chr7.1677 Acer truncatum HOM05D003252 ORTHO05D003640 2.9e-19 99.8 223 31.4
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 2.9e-19 99.8 216 33.8
QL02p060441 Quercus lobata HOM05D003252 ORTHO05D003640 3.8e-19 99.4 229 32.8
SGA_v2.0_scaffold385G50444 Striga asiatica HOM05D003252 ORTHO05D003640 4.9e-19 99.0 222 30.6
Carub.0004s1297 Capsella rubella HOM05D003252 ORTHO05D003640 8.4e-19 98.2 237 28.7
Eucgr.C03557 Eucalyptus grandis HOM05D003252 ORTHO05D003640 1.1e-18 97.8 230 31.3
FAN23G1755 Fragaria x ananassa HOM05D003252 ORTHO05D003640 1.1e-18 97.8 225 33.3
Aqoxy7G04115 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.4e-18 97.4 223 30.9
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 1.4e-18 97.4 235 32.3
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 1.4e-18 97.4 222 32.4
Cpa.g.sc28.70 Carica papaya HOM05D003252 ORTHO05D003640 3.2e-18 96.3 224 31.7
Ca_21312_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 4.2e-18 95.9 222 30.6
Glyma.17G050600 Glycine max HOM05D003252 ORTHO05D003640 7.1e-18 95.1 223 32.3
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 9.3e-18 94.7 227 31.3
Lj4g0014141 Lotus japonicus HOM05D003252 ORTHO05D003640 1.6e-17 94.0 229 33.6
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 2.1e-17 93.6 221 30.3
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 2.7e-17 93.2 221 30.3
Aa31sc893G10 Aethionema arabicum HOM05D003252 ORTHO05D003640 3.5e-17 92.8 229 28.4
Migut.L01549 Erythranthe guttata HOM05D003252 ORTHO05D003640 3.5e-17 92.8 218 31.7
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 3.5e-17 92.8 228 28.5
Oeu035905.1 Olea europaea HOM05D003252 ORTHO05D003640 3.5e-17 92.8 221 35.3
VMungo1215G3032 Vigna mungo HOM05D003252 ORTHO05D003640 3.5e-17 92.8 217 31.8
Medtr0121s0060 Medicago truncatula HOM05D003252 ORTHO05D003640 6.0e-17 92.0 231 32.0
Oeu063412.1 Olea europaea HOM05D003252 ORTHO05D003640 6.0e-17 92.0 217 35.0
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 1.0e-16 91.3 236 28.0
Gohir.A05G033001 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.3e-16 90.9 221 29.4
PSO210G6784 Papaver somniferum HOM05D003252 ORTHO05D003640 1.3e-16 90.9 235 30.6
Aqoxy3G03348 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 2.3e-16 90.1 232 29.3
Phvul.003G132200 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 2.3e-16 90.1 231 30.7
CiPaw.03G208300 Carya illinoinensis HOM05D003252 ORTHO05D003640 3.0e-16 89.7 227 30.8
Sabra11G0116400 Salix brachista HOM05D003252 ORTHO05D003640 3.0e-16 89.7 195 33.3
Aa31sc437G20 Aethionema arabicum HOM05D003252 ORTHO05D003640 3.9e-16 89.4 230 27.4
Lsat_1_v5_gn_5_141361 Lactuca sativa HOM05D003252 ORTHO05D003640 3.9e-16 89.4 219 29.2
MSTRG.10521 Avicennia marina HOM05D003252 ORTHO05D003640 5.1e-16 89.0 221 30.3
A01p31300 Brassica napus HOM05D003252 ORTHO05D003640 5.1e-16 89.0 222 28.4
Migut.L01550 Erythranthe guttata HOM05D003252 ORTHO05D003640 6.7e-16 88.6 221 32.6
MBI14_g17369_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 6.7e-16 88.6 219 32.9
Sp3g21430 Schrenkiella parvula HOM05D003252 ORTHO05D003640 6.7e-16 88.6 225 28.0
C01p39910 Brassica napus HOM05D003252 ORTHO05D003640 8.7e-16 88.2 219 28.3
Oeu035904.1 Olea europaea HOM05D003252 ORTHO05D003640 8.7e-16 88.2 222 33.8
Aqoxy7G04118 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 1.1e-15 87.8 221 28.1
BolC1t03946H Brassica oleracea HOM05D003252 ORTHO05D003640 1.1e-15 87.8 219 28.3
AUR62028990 Chenopodium quinoa HOM05D003252 ORTHO05D003640 1.5e-15 87.4 193 33.2
FvH4_1g08360 Fragaria vesca HOM05D003252 ORTHO05D003640 1.5e-15 87.4 223 31.8
Lsat_1_v5_gn_7_13541 Lactuca sativa HOM05D003252 ORTHO05D003640 1.5e-15 87.4 219 30.1
BraA01t03256Z Brassica rapa HOM05D003252 ORTHO05D003640 1.9e-15 87.0 222 28.4
DCAR_000225 Daucus carota HOM05D003252 ORTHO05D003640 2.5e-15 86.7 218 28.9
AUR62025184 Chenopodium quinoa HOM05D003252 ORTHO05D003640 3.3e-15 86.3 193 32.1
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 3.3e-15 86.3 208 31.2
Aqoxy7G04119 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 4.3e-15 85.9 220 27.7
Ca_06729_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 4.3e-15 85.9 226 30.5
Haze_06476 Corylus avellana HOM05D003252 ORTHO05D003640 5.6e-15 85.5 222 34.2
Aqoxy4G00101 Aquilegia oxysepala HOM05D003252 ORTHO05D003640 9.6e-15 84.7 222 25.7
Lj4g0019774 Lotus japonicus HOM05D003252 ORTHO05D003640 9.6e-15 84.7 225 30.7
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 9.6e-15 84.7 238 30.3
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 1.3e-14 84.3 231 27.3
Ca_21311_v3 Cicer arietinum L. HOM05D003252 ORTHO05D003640 1.6e-14 84.0 228 30.3
Peaxi162Scf00127g00006 Petunia axillaris HOM05D003252 ORTHO05D003640 1.6e-14 84.0 219 29.2
Cfa000438 Carpinus fangiana HOM05D003252 ORTHO05D003640 2.1e-14 83.6 221 34.4
ECA233G4986 Erigeron canadensis HOM05D003252 ORTHO05D003640 2.1e-14 83.6 222 31.1
Medtr4g125530 Medicago truncatula HOM05D003252 ORTHO05D003640 2.1e-14 83.6 226 29.2
DCAR_028308 Daucus carota HOM05D003252 ORTHO05D003640 3.7e-14 82.8 228 28.5
Psat1g133280 Pisum sativum HOM05D003252 ORTHO05D003640 3.7e-14 82.8 241 30.3
FAN23G1081 Fragaria x ananassa HOM05D003252 ORTHO05D003640 6.2e-14 82.0 207 32.9
TPR.G504 Trifolium pratense HOM05D003252 ORTHO05D003640 6.2e-14 82.0 219 28.8
Ah.09g231370 Amaranthus hybridus HOM05D003252 ORTHO05D003640 8.1e-14 81.6 224 31.2
Carub.0001s4024 Capsella rubella HOM05D003252 ORTHO05D003640 8.1e-14 81.6 222 30.6
CARHR041440 Cardamine hirsuta HOM05D003252 ORTHO05D003640 1.1e-13 81.3 228 28.9
arahy.Tifrunner.gnm1.ann1.MZL9F0 Arachis hypogaea HOM05D003252 ORTHO05D003640 1.4e-13 80.9 224 31.2
arahy.Tifrunner.gnm1.ann1.R4HL53 Arachis hypogaea HOM05D003252 ORTHO05D003640 1.4e-13 80.9 224 31.7
CARHR125300 Cardamine hirsuta HOM05D003252 ORTHO05D003640 1.4e-13 80.9 231 27.3
Lalb_Chr07g0181081 Lupinus albus HOM05D003252 ORTHO05D003640 1.4e-13 80.9 218 29.4
CiPaw.09G059300 Carya illinoinensis HOM05D003252 ORTHO05D003640 1.8e-13 80.5 225 31.6
Psat4g017400 Pisum sativum HOM05D003252 ORTHO05D003640 1.8e-13 80.5 217 30.4
Lj3g0007166 Lotus japonicus HOM05D003252 ORTHO05D003640 3.1e-13 79.7 220 30.5
Lj6g0011531 Lotus japonicus HOM05D003252 ORTHO05D003640 3.1e-13 79.7 227 29.1
Eucgr.K03106 Eucalyptus grandis HOM05D003252 ORTHO05D003640 4.0e-13 79.3 235 31.5
BcaB04g20425 Brassica carinata HOM05D003252 ORTHO05D003640 5.3e-13 79.0 221 29.9
HanXRQChr10g0319651 Helianthus annuus HOM05D003252 ORTHO05D003640 5.3e-13 79.0 219 29.7
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 6.9e-13 78.6 195 31.8
HPP92_024331 Vanilla planifolia HOM05D003252 ORTHO05D003640 1.2e-12 77.8 226 31.4
AL1G59220 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 1.5e-12 77.4 218 28.4
Phvul.009G228300 Phaseolus vulgaris HOM05D003252 ORTHO05D003640 2.6e-12 76.6 222 32.4
Lsat_1_v5_gn_5_141381 Lactuca sativa HOM05D003252 ORTHO05D003640 4.5e-12 75.9 188 29.8
Thhalv10011777m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 1.7e-11 73.9 226 30.1
Lj7C684T3 Lonicera japonica HOM05D003252 ORTHO05D003640 1.7e-11 73.9 134 32.1
A05p19630 Brassica napus HOM05D003252 ORTHO05D003640 2.9e-11 73.2 221 29.0
ATR0377G002 Amborella trichopoda HOM05D003252 ORTHO05D003640 1.1e-10 71.2 221 29.4
QL05p040193 Quercus lobata HOM05D003252 ORTHO05D003640 1.9e-10 70.5 242 30.6
ECA233G4398 Erigeron canadensis HOM05D000010 ORTHO05D000063 9.3e-10 68.2 195 30.8
Lj3g0017073 Lotus japonicus HOM05D003252 ORTHO05D003640 9.3e-10 68.2 176 34.1
Lsat_1_v5_gn_3_8021 Lactuca sativa HOM05D003252 ORTHO05D003640 1.6e-09 67.4 204 27.5
CANSAT46G0006 Cannabis sativa HOM05D003252 ORTHO05D003640 3.5e-09 66.2 223 29.1
CANSAT56G1662 Cannabis sativa HOM05D003252 ORTHO05D003640 1.3e-08 64.3 224 29.0
Peaxi162Scf00073g00133 Petunia axillaris HOM05D003252 ORTHO05D003640 3.0e-08 63.2 176 27.8
Sc08g0008820 Simmondsia chinensis HOM05D003252 ORTHO05D003640 2.5e-07 60.1 125 31.2
HPP92_023470 Vanilla planifolia HOM05D003252 ORTHO05D003640 2.5e-07 60.1 221 29.4
DCAR_023599 Daucus carota HOM05D003252 ORTHO05D003640 1.3e-06 57.8 214 26.6
unitig_8.g4275 Utricularia gibba HOM05D003252 ORTHO05D003640 6.3e-06 55.5 147 26.5


User provided reference genes

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