Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 8.4e-48 193.4 97 100.0
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.1e-26 121.7 90 71.1
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.0e-21 105.1 87 62.1
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 3.0e-21 105.1 82 67.1
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.0e-21 105.1 75 66.7
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 3.9e-21 104.8 84 67.9
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 3.9e-21 104.8 84 67.9
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 5.1e-21 104.4 81 64.2
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.7e-21 103.6 87 60.9
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.1e-20 103.2 89 64.0
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.1e-20 103.2 64 81.2
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.5e-20 102.8 87 60.9
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.5e-20 102.8 87 60.9
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.5e-20 102.8 80 67.5
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.5e-20 102.8 64 79.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 2.5e-20 102.1 80 62.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.5e-20 102.1 81 65.4
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.5e-20 102.1 77 67.5
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.5e-20 102.1 90 60.0
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.5e-20 102.1 72 73.6
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 3.3e-20 101.7 67 71.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.3e-20 101.7 80 65.0
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.3e-20 101.7 63 76.2
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.3e-20 101.3 88 62.5
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 4.3e-20 101.3 80 66.2
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 4.3e-20 101.3 67 70.1
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 5.6e-20 100.9 80 65.0
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.6e-20 100.9 75 65.3
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 7.4e-20 100.5 63 73.0
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.4e-20 100.5 82 63.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 7.4e-20 100.5 82 63.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 7.4e-20 100.5 82 63.4
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 7.4e-20 100.5 67 70.1
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 7.4e-20 100.5 82 62.2
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 9.6e-20 100.1 63 76.2
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 9.6e-20 100.1 63 77.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.3e-19 99.8 77 67.5
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.3e-19 99.8 62 75.8
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.3e-19 99.8 72 65.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 1.3e-19 99.8 71 66.2
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.6e-19 99.4 72 65.3
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.6e-19 99.4 66 69.7
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.1e-19 99.0 76 68.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.8e-19 98.6 75 65.3
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.8e-19 98.6 67 70.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 2.8e-19 98.6 67 67.2
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 2.8e-19 98.6 89 60.7
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.8e-19 98.6 80 63.8
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.8e-19 98.6 80 63.8
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.8e-19 98.6 61 77.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 2.8e-19 98.6 61 77.0
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.8e-19 98.6 60 76.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.7e-19 98.2 76 63.2
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 6.2e-19 97.4 60 76.7
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 6.2e-19 97.4 60 76.7
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 6.2e-19 97.4 61 75.4
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 6.2e-19 97.4 61 77.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 6.2e-19 97.4 61 75.4
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 8.2e-19 97.1 75 66.7
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 8.2e-19 97.1 81 64.2
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.1e-18 96.7 63 71.4
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.1e-18 96.7 89 60.7
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.4e-18 96.3 67 68.7
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.8e-18 95.9 71 70.4
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 2.4e-18 95.5 90 56.7
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.4e-18 95.5 75 62.7
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.4e-18 95.5 65 67.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.1e-18 95.1 68 72.1
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 3.1e-18 95.1 76 68.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 3.1e-18 95.1 63 73.0
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.1e-18 95.1 91 58.2
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 4.0e-18 94.7 67 64.2
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 5.3e-18 94.4 63 69.8
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 5.3e-18 94.4 67 64.2
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 5.3e-18 94.4 61 73.8
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 6.9e-18 94.0 74 62.2
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 9.0e-18 93.6 88 58.0
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 9.0e-18 93.6 84 56.0
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 9.0e-18 93.6 90 55.6
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 9.0e-18 93.6 62 69.4
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 9.0e-18 93.6 62 69.4
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 9.0e-18 93.6 90 55.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 9.0e-18 93.6 62 69.4
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 9.0e-18 93.6 63 71.4
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-18 93.6 63 71.4
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-18 93.6 63 71.4
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-18 93.6 63 71.4
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 9.0e-18 93.6 72 66.7
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.2e-17 93.2 64 67.2
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-17 93.2 65 69.2
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.2e-17 93.2 68 64.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.5e-17 92.8 63 66.7
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.5e-17 92.8 63 71.4
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.0e-17 92.4 90 54.4
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.0e-17 92.4 81 61.7
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.6e-17 92.0 81 61.7
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.6e-17 92.0 67 62.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.6e-17 92.0 67 62.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.6e-17 92.0 90 55.6
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 3.4e-17 91.7 90 54.4
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.4e-17 91.7 63 69.8
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.5e-17 91.3 61 72.1
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 5.8e-17 90.9 66 65.2
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 7.6e-17 90.5 81 60.5
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.6e-17 90.5 58 69.0
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.0e-16 90.1 72 63.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.0e-16 90.1 83 60.2
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-16 89.7 74 59.5
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.3e-16 89.7 90 54.4
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.3e-16 89.7 62 64.5
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.3e-16 89.7 83 59.0
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.3e-16 89.7 75 58.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.9e-16 88.6 70 60.0
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.9e-16 88.6 70 60.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 3.8e-16 88.2 61 67.2
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 4.9e-16 87.8 81 58.0
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 4.9e-16 87.8 81 59.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.5e-16 87.4 61 67.2
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 6.5e-16 87.4 50 78.0
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 8.4e-16 87.0 61 68.9
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 8.4e-16 87.0 83 55.4
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 1.4e-15 86.3 90 51.1
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.4e-15 86.3 58 67.2
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.9e-15 85.9 48 81.2
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.9e-15 85.9 61 65.6
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 3.2e-15 85.1 77 59.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.2e-15 84.7 62 67.7
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 4.2e-15 84.7 77 59.7
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 4.2e-15 84.7 50 78.0
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 5.5e-15 84.3 78 57.7
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.5e-15 84.3 66 62.1
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 9.3e-15 83.6 73 57.5
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 9.3e-15 83.6 62 67.7
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.2e-14 83.2 89 48.3
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.1e-14 82.4 86 52.3
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 4.6e-14 81.3 62 66.1
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 6.0e-14 80.9 78 57.7
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.0e-13 80.1 50 76.0
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 2.5e-12 75.5 73 56.2
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 3.3e-12 75.1 60 63.3
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 4.3e-12 74.7 52 67.3
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 4.3e-12 74.7 62 58.1
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 5.7e-12 74.3 71 54.9
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.2e-11 72.4 46 69.6
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.2e-11 72.4 56 60.7
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.8e-11 72.0 46 73.9
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.0e-09 65.9 50 68.0
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-09 65.9 56 62.5
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.0e-09 65.9 56 62.5
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.6e-09 65.5 52 59.6
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.3e-08 63.2 57 59.6
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.9e-07 59.3 49 53.1
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 5.5e-07 57.8 58 44.8
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-06 55.5 40 62.5
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 4.6e-06 54.7 38 63.2
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 4.6e-06 54.7 38 63.2
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.6e-06 54.7 47 61.7


User provided reference genes

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