Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006130 Simmondsia chinensis HOM05D000151 ORTHO05D000074 2.5e-77 292.0 143 100.0
Sc18g0006120 Simmondsia chinensis HOM05D000151 ORTHO05D000074 1.0e-30 137.1 140 52.1
Dinv14141 Davidia involucrata HOM05D000151 ORTHO05D000074 5.6e-16 88.2 95 49.5
Actinidia18026 Actinidia chinensis HOM05D000151 ORTHO05D000074 2.8e-15 85.9 93 47.3
AUR62012982 Chenopodium quinoa HOM05D000151 ORTHO05D000074 8.1e-15 84.3 98 43.9
RcHm_v2.0_Chr6g0279451 Rosa chinensis HOM05D000151 ORTHO05D000074 2.3e-14 82.8 104 45.2
Actinidia20542 Actinidia chinensis HOM05D000151 ORTHO05D000074 4.0e-14 82.0 93 46.2
Prupe.8G172400 Prunus persica HOM05D000151 ORTHO05D000074 4.0e-14 82.0 141 36.9
Rhsim11G0195100 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.5e-13 80.1 94 47.9
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 2.0e-13 79.7 97 44.3
CANSAT25G1224 Cannabis sativa HOM05D000151 ORTHO05D000074 2.6e-13 79.3 113 43.4
Thhalv10022716m.g Eutrema salsugineum HOM05D000151 ORTHO05D000074 3.4e-13 79.0 97 43.3
FvH4_2g15930 Fragaria vesca HOM05D000151 ORTHO05D000074 3.4e-13 79.0 111 42.3
FAN24G3248 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.4e-13 79.0 111 42.3
Lj5P174T68 Lonicera japonica HOM05D000151 ORTHO05D000074 3.4e-13 79.0 94 45.7
MD05G1128300 Malus domestica HOM05D000151 ORTHO05D000074 3.4e-13 79.0 92 48.9
Thecc.02G052700 Theobroma cacao HOM05D000151 ORTHO05D000074 3.4e-13 79.0 96 44.8
FAN15G2361 Fragaria x ananassa HOM05D000151 ORTHO05D000074 4.4e-13 78.6 111 42.3
Duzib052G1153 Durio zibethinus HOM05D000151 ORTHO05D000074 5.8e-13 78.2 95 45.3
Ah.01g008040 Amaranthus hybridus HOM05D000151 ORTHO05D000074 7.5e-13 77.8 97 41.2
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 7.5e-13 77.8 97 43.3
AUR62009994 Chenopodium quinoa HOM05D000151 ORTHO05D000074 7.5e-13 77.8 97 42.3
Hma1.2p1_0032F.1_g018990 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 7.5e-13 77.8 94 46.8
Manes.04G069000 Manihot esculenta HOM05D000151 ORTHO05D000074 9.9e-13 77.4 91 45.1
Duzib132G0179 Durio zibethinus HOM05D000151 ORTHO05D000074 1.3e-12 77.0 104 43.3
Sabra04G0121100 Salix brachista HOM05D000151 ORTHO05D000074 1.3e-12 77.0 91 47.3
SHI05785 Sapria himalayana HOM05D000151 ORTHO05D000074 1.7e-12 76.6 92 45.7
COL.COLO4_18005 Corchorus olitorius HOM05D000151 ORTHO05D000074 2.2e-12 76.3 93 43.0
FAN20G3023 Fragaria x ananassa HOM05D000151 ORTHO05D000074 2.2e-12 76.3 111 41.4
Lj3g0027507 Lotus japonicus HOM05D000151 ORTHO05D000074 2.2e-12 76.3 88 45.5
CiPaw.05G087200 Carya illinoinensis HOM05D000151 ORTHO05D000074 2.9e-12 75.9 92 44.6
vmacro02302 Vaccinium macrocarpon HOM05D000151 ORTHO05D000074 2.9e-12 75.9 94 42.6
Gohir.A04G132412 Gossypium hirsutum HOM05D000151 ORTHO05D000074 4.9e-12 75.1 93 44.1
Potri.004G179685 Populus trichocarpa HOM05D000151 ORTHO05D000074 4.9e-12 75.1 93 45.2
Sp3g30320 Schrenkiella parvula HOM05D000151 ORTHO05D000074 6.4e-12 74.7 97 41.2
TAR628G0991 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.4e-12 74.7 91 46.2
CARHR107350 Cardamine hirsuta HOM05D000151 ORTHO05D000074 8.3e-12 74.3 90 44.4
Eucgr.I01474 Eucalyptus grandis HOM05D000151 ORTHO05D000074 8.3e-12 74.3 103 42.7
Gohir.D04G169200 Gossypium hirsutum HOM05D000151 ORTHO05D000074 8.3e-12 74.3 93 44.1
Gohir.D04G169400 Gossypium hirsutum HOM05D000151 ORTHO05D000074 8.3e-12 74.3 93 44.1
Gorai.012G157500 Gossypium raimondii HOM05D000151 ORTHO05D000074 8.3e-12 74.3 93 44.1
Potri.009G140000 Populus trichocarpa HOM05D000151 ORTHO05D000074 8.3e-12 74.3 91 42.9
C03p57820 Brassica napus HOM05D000151 ORTHO05D000074 1.1e-11 73.9 97 41.2
BcaC01g02965 Brassica carinata HOM05D000151 ORTHO05D000074 1.4e-11 73.6 97 41.2
BolC3t18053H Brassica oleracea HOM05D000151 ORTHO05D000074 1.4e-11 73.6 97 41.2
TWI79G0440 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.9e-11 73.2 106 42.5
Aa31LG8G14220 Aethionema arabicum HOM05D000151 ORTHO05D000074 2.4e-11 72.8 90 45.6
AL3G49820 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 2.4e-11 72.8 90 44.4
Haze_02069 Corylus avellana HOM05D000151 ORTHO05D000074 2.4e-11 72.8 94 44.7
BcaB08g34687 Brassica carinata HOM05D000151 ORTHO05D000074 3.2e-11 72.4 97 41.2
CSS0014442 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 3.2e-11 72.4 95 43.2
Nn6g31857 Nelumbo nucifera HOM05D000151 ORTHO05D000074 3.2e-11 72.4 89 46.1
AT2G17030 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 5.4e-11 71.6 90 43.3
PSO541G6252 Papaver somniferum HOM05D000151 ORTHO05D000074 5.4e-11 71.6 114 34.2
Cfa005316 Carpinus fangiana HOM05D000151 ORTHO05D000074 7.1e-11 71.2 94 43.6
Cpa.g.sc20.134 Carica papaya HOM05D000151 ORTHO05D000074 1.6e-10 70.1 92 44.6
Sabra09G0108800 Salix brachista HOM05D000151 ORTHO05D000074 1.6e-10 70.1 91 39.6
Sed0002173 Sechium edule HOM05D000151 ORTHO05D000074 2.1e-10 69.7 89 40.4
Ciclev10028612m.g Citrus clementina HOM05D000151 ORTHO05D000074 2.7e-10 69.3 90 45.6
SGA_v2.0_scaffold32G13324 Striga asiatica HOM05D000151 ORTHO05D000074 2.7e-10 69.3 90 44.4
HanXRQChr15g0477851 Helianthus annuus HOM05D000151 ORTHO05D000074 3.5e-10 68.9 93 41.9
THA.LOC104819663 Tarenaya hassleriana HOM05D000151 ORTHO05D000074 3.5e-10 68.9 92 43.5
Aqoxy6G01888 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.6e-10 68.6 145 30.3
Cc00_g28600 Coffea canephora HOM05D000151 ORTHO05D000074 4.6e-10 68.6 94 40.4
Migut.B00040 Erythranthe guttata HOM05D000151 ORTHO05D000074 4.6e-10 68.6 89 42.7
ECA246G4358 Erigeron canadensis HOM05D000151 ORTHO05D000074 6.0e-10 68.2 88 47.7
Lsat_1_v5_gn_3_47300 Lactuca sativa HOM05D004423 ORTHO05D005464 7.8e-10 67.8 91 39.6
PSO675G1630 Papaver somniferum HOM05D000151 ORTHO05D000074 1.0e-09 67.4 114 34.2
Peaxi162Scf00362g00315 Petunia axillaris HOM05D000151 ORTHO05D000074 1.0e-09 67.4 100 40.0
QL11p053208 Quercus lobata HOM05D000151 ORTHO05D000074 1.0e-09 67.4 98 45.9
Aqoxy6G01889 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.3e-09 67.0 92 39.1
MELO3C013657.2 Cucumis melo HOM05D000151 ORTHO05D000074 1.3e-09 67.0 88 40.9
CsaV3_6G012680 Cucumis sativus L. HOM05D000151 ORTHO05D000074 1.3e-09 67.0 88 40.9
Psat5g209280 Pisum sativum HOM05D000151 ORTHO05D000074 1.3e-09 67.0 93 43.0
VMungo1080G0462 Vigna mungo HOM05D000151 ORTHO05D000074 1.3e-09 67.0 104 41.3
Glyma.10G088700 Glycine max HOM05D000151 ORTHO05D000074 2.3e-09 66.2 131 37.4
Lalb_Chr25g0283041 Lupinus albus HOM05D000151 ORTHO05D000074 2.3e-09 66.2 90 43.3
TWI31G0990 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 2.3e-09 66.2 92 43.5
PGR142G2333 Punica granatum HOM05D000151 ORTHO05D000074 3.9e-09 65.5 105 40.0
Carub.0003s3095 Capsella rubella HOM05D000151 ORTHO05D000074 5.1e-09 65.1 90 42.2
Medtr3g058460 Medicago truncatula HOM05D000151 ORTHO05D000074 1.5e-08 63.5 100 41.0
DCAR_022831 Daucus carota HOM05D000151 ORTHO05D000074 1.9e-08 63.2 89 39.3
Phvul.005G022400 Phaseolus vulgaris HOM05D000151 ORTHO05D000074 1.9e-08 63.2 92 39.1
Nitab4.5_0003603g0140 Nicotiana tabacum HOM05D000151 ORTHO05D000074 3.3e-08 62.4 94 37.2
Nitab4.5_0003679g0070 Nicotiana tabacum HOM05D000151 ORTHO05D000074 3.3e-08 62.4 94 37.2
TPR.G35298 Trifolium pratense HOM05D000151 ORTHO05D000074 4.3e-08 62.0 89 39.3
CAN.G1235.35 Capsicum annuum HOM05D000151 ORTHO05D000074 5.6e-08 61.6 92 39.1
ClCG00G001890 Citrullus lanatus HOM05D000151 ORTHO05D000074 5.6e-08 61.6 89 38.2
ClCG02G011070 Citrullus lanatus HOM05D000151 ORTHO05D000074 5.6e-08 61.6 89 38.2
Lj3g0018223 Lotus japonicus HOM05D000151 ORTHO05D000074 5.6e-08 61.6 87 43.7
Medtr3g037710 Medicago truncatula HOM05D000151 ORTHO05D000074 5.6e-08 61.6 87 41.4
AT2G17036 Arabidopsis thaliana HOM05D000151 ORTHO05D000074 1.2e-07 60.5 102 39.2
arahy.Tifrunner.gnm1.ann1.2FAG51 Arachis hypogaea HOM05D000151 ORTHO05D000074 2.1e-07 59.7 104 39.4
MSTRG.19960 Avicennia marina HOM05D000151 ORTHO05D000074 2.1e-07 59.7 98 38.8
Sopen01g053970 Solanum pennellii HOM05D000151 ORTHO05D000074 2.1e-07 59.7 92 38.0
PGSC0003DMG400018632 Solanum tuberosum HOM05D000151 ORTHO05D000074 3.6e-07 58.9 92 38.0
Aqoxy7G00901 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.1e-07 57.8 96 32.3
AL3G49860 Arabidopsis lyrata HOM05D000151 ORTHO05D000074 1.1e-06 57.4 103 37.9
C07p06460 Brassica napus HOM05D000151 ORTHO05D000074 1.1e-06 57.4 40 62.5
Solyc01g111920.3 Solanum lycopersicum HOM05D000151 ORTHO05D000074 1.4e-06 57.0 92 37.0
Ca_14445_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 1.8e-06 56.6 89 39.3
EL10Ac9g21314 Beta vulgaris HOM05D000151 ORTHO05D000074 3.1e-06 55.8 108 29.6
Medtr3g030050 Medicago truncatula HOM05D000151 ORTHO05D000074 5.2e-06 55.1 89 36.0
AUR62012980 Chenopodium quinoa HOM05D000151 ORTHO05D000074 8.9e-06 54.3 108 28.7


User provided reference genes

Program Settings