Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 4.3e-150 534.6 274 100.0
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.1e-60 237.7 280 48.9
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.0e-58 229.6 280 46.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 3.0e-58 229.6 280 46.4
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 6.0e-51 205.3 253 47.8
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.3e-49 199.5 275 44.7
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 9.0e-47 191.4 282 47.9
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.5e-46 190.7 280 46.4
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 4.9e-45 185.7 278 47.1
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 9.3e-44 181.4 291 42.3
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.5e-43 179.5 251 46.2
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 3.5e-43 179.5 274 44.9
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 8.7e-42 174.9 285 43.5
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.5e-41 174.1 278 44.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.9e-41 173.7 277 43.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.6e-41 171.4 276 44.2
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 9.6e-41 171.4 276 44.2
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.1e-40 170.2 263 43.0
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 6.2e-40 168.7 274 42.3
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 6.2e-40 168.7 281 40.2
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.1e-39 167.9 271 43.5
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 3.1e-39 166.4 258 43.0
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 3.1e-39 166.4 280 42.5
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.0e-39 166.0 282 43.6
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.0e-38 163.7 268 43.3
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 4.5e-38 162.5 263 41.1
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 7.6e-38 161.8 264 43.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.7e-37 160.6 293 39.9
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.2e-37 160.2 281 42.7
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.8e-37 159.5 278 41.7
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.8e-37 159.5 259 41.3
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.9e-37 159.1 273 42.9
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.9e-37 159.1 273 41.0
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 6.4e-37 158.7 274 42.3
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 8.4e-37 158.3 273 39.9
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.9e-36 157.1 256 43.4
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.4e-36 156.8 282 42.2
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 3.2e-36 156.4 273 39.6
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 4.2e-36 156.0 283 40.6
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 9.3e-36 154.8 273 42.1
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 1.2e-35 154.5 276 41.3
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.7e-35 153.3 247 44.5
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.7e-35 153.3 278 40.3
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.5e-35 152.9 283 38.5
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.6e-35 152.5 273 40.3
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 4.6e-35 152.5 268 39.9
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 3.0e-34 149.8 278 40.3
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 8.7e-34 148.3 281 39.5
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.1e-33 147.9 273 37.7
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 2.5e-33 146.7 276 39.5
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.6e-33 145.6 269 38.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.3e-32 144.4 265 38.9
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.7e-32 142.9 279 38.4
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 4.8e-32 142.5 256 38.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.4e-31 141.0 270 40.0
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.4e-31 140.2 270 38.5
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-31 139.8 275 37.8
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.1e-31 139.8 271 38.7
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 4.0e-31 139.4 273 36.3
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.3e-31 139.0 287 36.2
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 5.3e-31 139.0 276 37.3
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 6.9e-31 138.7 266 41.0
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.5e-30 137.5 260 39.6
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.5e-30 137.5 273 37.0
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 4.5e-30 136.0 276 37.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 2.1e-27 127.1 259 36.7
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.1e-27 127.1 265 34.3
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.0e-27 125.6 260 34.2
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.8e-26 124.0 251 37.5
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 3.9e-26 122.9 258 34.5
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.9e-25 120.6 247 41.3
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.5e-25 120.2 279 34.1
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 7.4e-25 118.6 195 43.1
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.3e-24 117.9 289 34.9
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 3.7e-24 116.3 266 35.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 3.7e-24 116.3 257 37.0
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.4e-23 114.4 279 31.5
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.4e-23 114.4 295 32.2
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.8e-23 114.0 266 31.2
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.3e-23 112.5 260 35.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.2e-22 111.3 266 33.1
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.0e-22 110.5 211 39.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.6e-22 110.2 219 41.1
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.6e-22 108.6 276 34.8
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 7.6e-22 108.6 262 31.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 7.6e-22 108.6 276 30.4
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.3e-21 107.8 274 30.7
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.7e-21 107.5 265 32.1
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.9e-20 104.0 247 32.8
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.5e-20 103.6 254 36.6
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.2e-20 103.2 269 33.8
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.5e-20 102.4 254 37.0
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 5.5e-20 102.4 135 51.9
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 9.3e-20 101.7 86 64.0
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.3e-20 101.7 86 64.0
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.3e-20 101.7 86 64.0
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.3e-20 101.7 86 64.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.3e-20 101.7 86 64.0
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 2.1e-19 100.5 231 37.7
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.6e-19 99.8 267 33.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 6.1e-19 99.0 120 50.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 7.9e-19 98.6 180 41.1
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.0e-18 98.2 261 34.1
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.8e-18 97.4 298 29.5
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.0e-18 96.7 265 33.6
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 3.0e-18 96.7 113 48.7
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 3.9e-18 96.3 260 32.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.9e-18 96.3 295 29.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 5.1e-18 95.9 270 33.0
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 6.7e-18 95.5 263 32.7
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-17 94.7 282 31.2
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.3e-17 92.8 256 34.4
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 7.4e-17 92.0 76 61.8
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.3e-16 91.3 255 30.6
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.3e-16 91.3 282 27.3
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.3e-16 91.3 130 44.6
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.7e-16 90.9 73 63.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.7e-16 90.9 76 61.8
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.2e-16 90.5 262 29.8
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.8e-16 90.1 180 36.1
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 3.7e-16 89.7 254 30.7
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 3.7e-16 89.7 230 34.8
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.8e-16 89.4 254 30.3
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 4.8e-16 89.4 214 35.0
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 8.2e-16 88.6 256 31.6
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-15 88.2 248 30.6
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 1.4e-15 87.8 167 39.5
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.4e-15 87.8 95 52.6
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.4e-15 87.0 147 42.2
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 4.1e-15 86.3 232 35.8
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.3e-15 85.9 226 33.6
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 9.1e-15 85.1 80 55.0
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.2e-14 84.7 113 49.6
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.0e-14 84.0 83 51.8
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.6e-14 83.6 223 33.6
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 4.5e-14 82.8 261 30.3
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.0e-13 81.6 275 30.2
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.7e-13 80.9 76 55.3
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.9e-13 80.1 257 31.5
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.9e-13 80.1 146 37.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.9e-13 80.1 103 42.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 6.5e-13 79.0 134 43.3
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.5e-13 79.0 257 30.7
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 8.5e-13 78.6 93 46.2
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 8.5e-13 78.6 290 27.9
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.1e-12 78.2 266 29.7
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.4e-12 77.8 136 40.4
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.9e-12 77.4 211 32.7
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.5e-12 77.0 80 51.2
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.2e-12 76.6 79 49.4
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.2e-12 76.6 270 29.6
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 9.4e-12 75.1 253 34.4
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.2e-11 74.7 245 31.0
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.2e-11 74.7 65 61.5
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 2.1e-11 73.9 272 29.0
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 2.7e-11 73.6 77 54.5
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 3.6e-11 73.2 67 61.2
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.7e-11 72.8 230 29.1
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.9e-11 72.0 258 28.7
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 7.9e-11 72.0 248 28.2
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.0e-10 71.6 67 59.7
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 1.4e-10 71.2 77 46.8
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 3.0e-10 70.1 98 45.9
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.9e-10 69.7 92 43.5
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 5.1e-10 69.3 67 58.2
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 5.1e-10 69.3 91 45.1
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.7e-10 68.9 186 35.5
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.1e-09 68.2 243 30.5
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 1.5e-09 67.8 87 43.7
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 9.7e-09 65.1 96 41.7
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.7e-09 65.1 98 40.8
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 2.8e-08 63.5 226 27.9


User provided reference genes

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