Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.4e-167 592.8 290 100.0
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 2.4e-127 459.1 291 76.3
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.6e-126 456.4 290 76.9
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.6e-126 454.9 286 78.0
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.9e-125 451.8 292 73.6
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.6e-125 451.1 283 76.7
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.6e-125 451.1 290 75.9
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 8.7e-125 450.7 291 75.9
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 5.6e-124 448.0 291 75.3
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 1.3e-123 446.8 289 75.8
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 1.8e-122 443.0 294 74.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.4e-122 442.6 290 76.9
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.0e-122 441.8 292 72.6
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 4.0e-122 441.8 292 72.6
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.3e-122 441.4 291 75.3
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.3e-122 441.4 291 75.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.5e-121 439.9 291 74.6
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 1.5e-121 439.9 292 75.7
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.5e-121 439.9 288 74.0
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.0e-121 439.5 291 73.9
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.6e-121 439.1 291 72.5
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.4e-121 438.7 291 74.6
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 4.5e-121 438.3 285 73.7
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 4.5e-121 438.3 290 74.8
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.5e-121 438.3 286 72.0
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 5.8e-121 438.0 291 74.2
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 5.8e-121 438.0 289 73.4
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 9.9e-121 437.2 290 75.2
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.7e-120 436.4 288 74.0
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.7e-120 436.4 287 76.3
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 3.8e-120 435.3 291 73.5
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 4.9e-120 434.9 292 73.6
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.1e-119 433.7 294 73.1
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 1.1e-119 433.7 285 75.1
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.4e-119 432.6 285 71.9
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 4.2e-119 431.8 285 74.0
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 5.5e-119 431.4 294 73.8
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.2e-118 430.3 283 72.4
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.6e-118 429.9 304 71.7
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.6e-118 429.9 285 72.6
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 2.7e-118 429.1 293 70.3
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 3.5e-118 428.7 289 72.7
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.5e-118 428.7 291 71.8
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 6.0e-118 427.9 328 67.1
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.8e-117 426.4 285 73.7
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 2.3e-117 426.0 283 72.8
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 2.3e-117 426.0 290 72.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.0e-117 425.6 289 73.4
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 73.2
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.9e-117 425.2 287 73.2
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 5.1e-117 424.9 283 72.4
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 5.1e-117 424.9 287 72.1
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.1e-116 423.7 290 71.4
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 1.5e-116 423.3 291 72.5
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 2.5e-116 422.5 286 71.7
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 2.5e-116 422.5 323 64.7
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.3e-116 422.2 291 71.5
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 5.6e-116 421.4 290 71.7
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 5.6e-116 421.4 293 71.3
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 5.6e-116 421.4 287 71.1
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 9.6e-116 420.6 291 70.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 9.6e-116 420.6 287 71.4
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 1.3e-115 420.2 287 72.1
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 1.3e-115 420.2 286 71.0
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.6e-115 419.9 291 70.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 2.8e-115 419.1 283 71.7
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 4.8e-115 418.3 287 71.1
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.1e-114 417.2 285 70.5
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 2.4e-114 416.0 284 72.5
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 2.4e-114 416.0 290 70.7
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 3.1e-114 415.6 287 69.7
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 4.0e-114 415.2 287 71.1
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.2e-113 413.7 286 69.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.5e-113 413.3 286 70.3
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.6e-113 412.5 291 70.1
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.6e-113 412.5 286 69.9
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.6e-113 412.5 289 70.9
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 4.5e-113 411.8 304 68.8
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 7.6e-113 411.0 286 69.6
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.6e-113 411.0 323 65.0
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 7.6e-113 411.0 323 65.0
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.7e-112 409.8 287 69.7
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 4.9e-112 408.3 286 69.6
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.5e-112 407.9 291 68.7
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 8.4e-112 407.5 285 72.3
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.9e-111 406.4 291 69.1
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 1.9e-111 406.4 285 69.8
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 5.5e-111 404.8 286 67.8
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 7.1e-111 404.4 291 67.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 2.1e-110 402.9 285 70.9
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.5e-110 402.1 291 68.7
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 1.3e-109 400.2 302 65.9
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 8.7e-109 397.5 252 75.0
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 2.1e-107 392.9 286 66.4
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 2.8e-107 392.5 239 78.2
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.7e-107 392.1 253 77.1
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 4.8e-107 391.7 253 78.7
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 4.8e-107 391.7 291 67.4
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.0e-105 386.3 252 72.6
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 8.5e-104 380.9 290 67.2
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.4e-103 380.2 288 67.4
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 3.2e-103 379.0 253 73.5
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 1.8e-101 373.2 253 72.3
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 3.3e-100 369.0 288 64.2
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 4.3e-100 368.6 278 63.7
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 3.7e-99 365.5 289 65.7
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 3.1e-98 362.5 291 65.6
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 2.0e-97 359.8 278 63.3
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.0e-96 357.5 232 75.9
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 4.6e-94 348.6 278 62.9
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.3e-91 338.2 207 78.7
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.8e-90 336.7 283 61.8
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 9.1e-90 334.3 242 68.2
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 8.5e-88 327.8 258 62.8
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 2.5e-87 326.2 286 58.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.6e-86 323.6 285 59.6
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.1e-84 317.4 284 53.9
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 5.7e-84 315.1 286 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 1.5e-79 300.4 245 60.8
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 3.8e-72 275.8 228 65.4
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.6e-68 263.1 169 71.0
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.8e-66 256.9 191 67.5
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 3.3e-55 219.5 298 44.6
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 1.2e-46 191.0 259 42.5
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.6e-46 190.7 130 69.2
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 9.2e-42 174.9 150 60.0
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 9.2e-42 174.9 272 37.5
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.7e-40 170.6 151 57.0
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 5.0e-40 169.1 152 57.9
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 3.3e-39 166.4 150 58.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.3e-35 154.5 137 58.4
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 7.1e-34 148.7 113 60.2
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.1e-29 133.3 265 31.7
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.9e-27 126.7 93 67.7
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.9e-26 124.0 169 42.0
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 9.2e-26 121.7 389 27.0
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.3e-24 117.9 100 60.0
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.9e-23 114.0 64 81.2
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 5.6e-23 112.5 82 69.5
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.2e-22 111.3 86 65.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 8.4e-19 98.6 66 68.2
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.3e-15 86.7 70 61.4
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 3.3e-15 86.7 109 49.5
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.6e-15 85.1 65 64.6
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 2.1e-14 84.0 188 30.3
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 2.8e-14 83.6 94 48.9
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.1e-13 81.6 144 38.2
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-13 81.3 60 70.0
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.8e-13 80.9 61 60.7
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 3.1e-13 80.1 46 73.9
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 5.3e-13 79.3 46 76.1
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 5.3e-13 79.3 46 76.1
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 9.0e-13 78.6 92 46.7
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 9.0e-13 78.6 88 48.9
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 9.0e-13 78.6 88 48.9
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 5.8e-12 75.9 122 42.6
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.8e-11 73.2 214 31.3
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.4e-10 69.3 56 64.3
Cc01_g02920 Coffea canephora HOM05D004481 ORTHO05D005350 2.8e-06 57.0 47 63.8
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 8.1e-06 55.5 42 71.4


User provided reference genes

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