Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0005420 Simmondsia chinensis HOM05D003854 ORTHO05D004415 4.8e-171 604.4 298 100.0
AUR62016846 Chenopodium quinoa HOM05D003854 ORTHO05D004415 1.5e-103 380.2 340 58.8
QL11p046566 Quercus lobata HOM05D003854 ORTHO05D004415 2.2e-99 366.3 337 57.3
GSVIVG01024163001 Vitis vinifera HOM05D003854 ORTHO05D004415 2.4e-98 362.8 337 55.5
PGR042G3425 Punica granatum HOM05D003854 ORTHO05D004415 3.9e-96 355.5 337 55.2
CiPaw.06G127600 Carya illinoinensis HOM05D003854 ORTHO05D004415 1.1e-95 354.0 340 55.6
TAR376G0190 Trochodendron aralioides HOM05D003854 ORTHO05D004415 7.4e-95 351.3 337 55.5
Rhsim05G0067900 Rhododendron simsii HOM05D003854 ORTHO05D004415 4.8e-94 348.6 338 55.9
Atru.chr5.3170 Acer truncatum HOM05D003854 ORTHO05D004415 8.1e-94 347.8 338 53.3
CANSAT11G1548 Cannabis sativa HOM05D003854 ORTHO05D004415 8.1e-94 347.8 337 54.6
Haze_02230 Corylus avellana HOM05D003854 ORTHO05D004415 1.8e-93 346.7 338 55.9
EL10Ac9g21623 Beta vulgaris HOM05D003854 ORTHO05D004415 3.1e-93 345.9 332 55.1
Hma1.2p1_0066F.1_g035740 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 4.0e-93 345.5 339 54.3
vmacro17417 Vaccinium macrocarpon HOM05D003854 ORTHO05D004415 1.2e-92 344.0 335 54.0
GSVIVG01018810001 Vitis vinifera HOM05D003854 ORTHO05D004415 1.2e-92 344.0 335 55.2
Duzib248G1248 Durio zibethinus HOM05D003854 ORTHO05D004415 2.9e-91 339.3 337 53.7
Ciclev10028796m.g Citrus clementina HOM05D003854 ORTHO05D004415 4.9e-91 338.6 337 52.8
Potri.009G125200 Populus trichocarpa HOM05D003854 ORTHO05D004415 4.9e-91 338.6 338 53.6
Cc02_g16850 Coffea canephora HOM05D003854 ORTHO05D004415 6.5e-91 338.2 337 54.6
COL.COLO4_10619 Corchorus olitorius HOM05D003854 ORTHO05D004415 6.5e-91 338.2 338 52.4
Potri.004G163600 Populus trichocarpa HOM05D003854 ORTHO05D004415 2.5e-90 336.3 338 52.4
RcHm_v2.0_Chr6g0268341 Rosa chinensis HOM05D003854 ORTHO05D004415 2.5e-90 336.3 337 55.2
MD05G1054700 Malus domestica HOM05D003854 ORTHO05D004415 3.2e-90 335.9 338 53.6
Hma1.2p1_0218F.1_g092290 Hydrangea macrophylla HOM05D003854 ORTHO05D004415 7.1e-90 334.7 340 52.9
Nn5g29249 Nelumbo nucifera HOM05D003854 ORTHO05D004415 1.2e-89 334.0 337 53.4
Oeu060416.1 Olea europaea HOM05D003854 ORTHO05D004415 3.5e-89 332.4 333 53.2
MD10G1062200 Malus domestica HOM05D003854 ORTHO05D004415 4.6e-89 332.0 338 52.4
FAN15G1017 Fragaria x ananassa HOM05D003854 ORTHO05D004415 6.0e-89 331.6 339 53.7
Prupe.8G083500 Prunus persica HOM05D003854 ORTHO05D004415 3.9e-88 328.9 338 53.8
Eucgr.G01738 Eucalyptus grandis HOM05D003854 ORTHO05D004415 1.1e-87 327.4 337 51.0
FAN27G2026 Fragaria x ananassa HOM05D003854 ORTHO05D004415 1.5e-87 327.0 339 52.5
Sed0011434 Sechium edule HOM05D003854 ORTHO05D004415 1.9e-87 326.6 337 50.7
FvH4_2g10640 Fragaria vesca HOM05D003854 ORTHO05D004415 2.5e-87 326.2 339 52.8
MSTRG.16879 Avicennia marina HOM05D003854 ORTHO05D004415 4.3e-87 325.5 334 52.1
Aqoxy6G02342 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 7.4e-87 324.7 338 50.9
ClCG02G004480 Citrullus lanatus HOM05D003854 ORTHO05D004415 9.6e-87 324.3 337 50.4
Gorai.003G010800 Gossypium raimondii HOM05D003854 ORTHO05D004415 9.6e-87 324.3 337 49.3
Sabra09G0096200 Salix brachista HOM05D003854 ORTHO05D004415 1.6e-86 323.6 339 51.9
MELO3C002788.2 Cucumis melo HOM05D003854 ORTHO05D004415 2.1e-86 323.2 337 50.1
Migut.H02258 Erythranthe guttata HOM05D003854 ORTHO05D004415 2.1e-86 323.2 333 51.4
COL.COLO4_21950 Corchorus olitorius HOM05D003854 ORTHO05D004415 2.8e-86 322.8 337 50.7
Gohir.A02G169600 Gossypium hirsutum HOM05D003854 ORTHO05D004415 4.8e-86 322.0 333 49.5
CsaV3_7G000470 Cucumis sativus L. HOM05D003854 ORTHO05D004415 6.3e-86 321.6 337 50.1
Gohir.D03G010400 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.4e-85 320.5 333 49.2
arahy.Tifrunner.gnm1.ann1.3VNM1Z Arachis hypogaea HOM05D003854 ORTHO05D004415 1.8e-85 320.1 336 50.6
Thecc.02G073800 Theobroma cacao HOM05D003854 ORTHO05D004415 4.1e-85 318.9 338 52.1
Solyc01g110460.4 Solanum lycopersicum HOM05D003854 ORTHO05D004415 6.9e-85 318.2 337 51.0
Actinidia20473 Actinidia chinensis HOM05D003854 ORTHO05D004415 1.2e-84 317.4 317 54.6
Sopen01g052590 Solanum pennellii HOM05D003854 ORTHO05D004415 1.2e-84 317.4 337 51.3
Gorai.011G293600 Gossypium raimondii HOM05D003854 ORTHO05D004415 1.5e-84 317.0 337 49.6
TPR.G28160 Trifolium pratense HOM05D003854 ORTHO05D004415 1.5e-84 317.0 336 51.8
SalBow3G0187 Salvia bowleyana HOM05D003854 ORTHO05D004415 2.0e-84 316.6 339 50.1
arahy.Tifrunner.gnm1.ann1.QESS4Q Arachis hypogaea HOM05D003854 ORTHO05D004415 3.4e-84 315.8 332 50.3
Duzib187G0007 Durio zibethinus HOM05D003854 ORTHO05D004415 5.9e-84 315.1 334 51.5
AL3G49110 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 1.3e-83 313.9 341 49.0
AL6G49210 Arabidopsis lyrata HOM05D003854 ORTHO05D004415 1.7e-83 313.5 341 48.7
Manes.04G064400 Manihot esculenta HOM05D003854 ORTHO05D004415 2.9e-83 312.8 338 50.6
Sp3g29800 Schrenkiella parvula HOM05D003854 ORTHO05D004415 8.4e-83 311.2 338 49.1
Hund00176 Selenicereus undatus HOM05D003854 ORTHO05D004415 8.4e-83 311.2 347 49.6
BcaB03g16370 Brassica carinata HOM05D003854 ORTHO05D004415 1.1e-82 310.8 336 49.1
Lalb_Chr01g0002121 Lupinus albus HOM05D003854 ORTHO05D004415 2.5e-82 309.7 335 49.9
Ca_20939_v3 Cicer arietinum L. HOM05D003854 ORTHO05D004415 4.2e-82 308.9 336 50.0
Thecc.01G021700 Theobroma cacao HOM05D003854 ORTHO05D004415 7.2e-82 308.1 332 49.1
AT2G16530 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 9.3e-82 307.8 341 48.1
Hund00184 Selenicereus undatus HOM05D003854 ORTHO05D004415 9.3e-82 307.8 298 54.7
arahy.Tifrunner.gnm1.ann1.29MT7J Arachis hypogaea HOM05D003854 ORTHO05D004415 2.7e-81 306.2 336 48.5
Lj5A188T38 Lonicera japonica HOM05D003854 ORTHO05D004415 3.6e-81 305.8 367 47.7
Gohir.A10G241100 Gossypium hirsutum HOM05D003854 ORTHO05D004415 4.6e-81 305.4 330 49.7
PSO675G2881 Papaver somniferum HOM05D003854 ORTHO05D004415 7.9e-81 304.7 340 50.6
TWI38G0305 Tripterygium wilfordii HOM05D003854 ORTHO05D004415 7.9e-81 304.7 336 50.0
Glyma.11G110300 Glycine max HOM05D003854 ORTHO05D004415 1.0e-80 304.3 336 49.7
THA.LOC104807290 Tarenaya hassleriana HOM05D003854 ORTHO05D004415 1.0e-80 304.3 336 49.1
VMungo1127G2166 Vigna mungo HOM05D003854 ORTHO05D004415 1.8e-80 303.5 336 49.4
BolC7t41138H Brassica oleracea HOM05D003854 ORTHO05D004415 3.0e-80 302.8 337 47.8
Carub.0003s3031 Capsella rubella HOM05D003854 ORTHO05D004415 3.0e-80 302.8 341 47.2
Duzib147G1035 Durio zibethinus HOM05D003854 ORTHO05D004415 5.1e-80 302.0 389 43.4
Thhalv10022773m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 5.1e-80 302.0 338 48.5
PSO541G5287 Papaver somniferum HOM05D003854 ORTHO05D004415 1.5e-79 300.4 340 48.8
Medtr4g072070 Medicago truncatula HOM05D003854 ORTHO05D004415 1.9e-79 300.1 337 48.7
HanXRQChr15g0478351 Helianthus annuus HOM05D003854 ORTHO05D004415 3.3e-79 299.3 335 49.3
arahy.Tifrunner.gnm1.ann1.JJ9I6U Arachis hypogaea HOM05D003854 ORTHO05D004415 7.4e-79 298.1 329 48.6
C07p07190 Brassica napus HOM05D003854 ORTHO05D004415 9.7e-79 297.7 341 47.5
Psat7g139560 Pisum sativum HOM05D003854 ORTHO05D004415 1.3e-78 297.4 335 49.3
Lj3g0001283 Lotus japonicus HOM05D003854 ORTHO05D004415 1.6e-78 297.0 366 45.9
CARHR106750 Cardamine hirsuta HOM05D003854 ORTHO05D004415 2.2e-78 296.6 333 49.2
CAN.G170.108 Capsicum annuum HOM05D003854 ORTHO05D004415 2.8e-78 296.2 376 45.5
Cpa.g.sc150.10 Carica papaya HOM05D003854 ORTHO05D004415 2.8e-78 296.2 337 48.4
arahy.Tifrunner.gnm1.ann1.E6R97N Arachis hypogaea HOM05D003854 ORTHO05D004415 6.3e-78 295.0 332 47.3
Aa31LG8G13840 Aethionema arabicum HOM05D003854 ORTHO05D004415 2.4e-77 293.1 335 47.5
Thhalv10000231m.g Eutrema salsugineum HOM05D003854 ORTHO05D004415 3.1e-77 292.7 338 46.7
Lsat_1_v5_gn_3_44581 Lactuca sativa HOM05D003854 ORTHO05D004415 6.9e-77 291.6 325 50.2
Sp3g29790 Schrenkiella parvula HOM05D003854 ORTHO05D004415 9.0e-77 291.2 337 45.7
SGA_v2.0_scaffold2G00942 Striga asiatica HOM05D003854 ORTHO05D004415 1.7e-75 287.0 311 50.5
Aqoxy3G00105 Aquilegia oxysepala HOM05D003854 ORTHO05D004415 6.5e-75 285.0 332 50.0
BraA07t28241Z Brassica rapa HOM05D003854 ORTHO05D004415 7.2e-74 281.6 329 44.7
ATR0149G029 Amborella trichopoda HOM05D003854 ORTHO05D004415 9.4e-74 281.2 332 47.6
Aa31LG10G12850 Aethionema arabicum HOM05D003854 ORTHO05D004415 4.6e-73 278.9 335 46.3
FAN24G1697 Fragaria x ananassa HOM05D003854 ORTHO05D004415 6.1e-73 278.5 310 50.6
Nitab4.5_0005266g0010 Nicotiana tabacum HOM05D003854 ORTHO05D004415 6.1e-73 278.5 336 48.8
Gohir.D13G096525 Gossypium hirsutum HOM05D003854 ORTHO05D004415 7.9e-73 278.1 328 46.6
BcaC06g36152 Brassica carinata HOM05D003854 ORTHO05D004415 1.8e-72 276.9 337 45.1
AT1G72590 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 1.1e-71 274.2 339 44.5
Gohir.D10G253300 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.5e-71 273.9 287 50.5
Phvul.011G038300 Phaseolus vulgaris HOM05D003854 ORTHO05D004415 1.5e-71 273.9 326 47.2
Thecc.10G037600 Theobroma cacao HOM05D003854 ORTHO05D004415 2.6e-71 273.1 339 46.9
BolC9t54197H Brassica oleracea HOM05D003854 ORTHO05D004415 7.4e-71 271.6 331 46.5
BraA09t36743Z Brassica rapa HOM05D003854 ORTHO05D004415 9.7e-71 271.2 330 47.3
ECA248G3380 Erigeron canadensis HOM05D003854 ORTHO05D004415 1.7e-70 270.4 318 46.2
BcaC04g23013 Brassica carinata HOM05D003854 ORTHO05D004415 3.7e-70 269.2 332 46.1
C09p13040 Brassica napus HOM05D003854 ORTHO05D004415 3.7e-70 269.2 332 46.1
ECA246G0289 Erigeron canadensis HOM05D003854 ORTHO05D004415 6.3e-70 268.5 317 47.6
A09p11030 Brassica napus HOM05D003854 ORTHO05D004415 1.4e-69 267.3 335 46.3
BcaC01g03005 Brassica carinata HOM05D003854 ORTHO05D004415 3.1e-69 266.2 328 47.0
Dinv41992 Davidia involucrata HOM05D003854 ORTHO05D004415 9.1e-69 264.6 249 55.8
MBI19_g04330_MAGBIO Magnolia biondii HOM05D003854 ORTHO05D004415 2.0e-68 263.5 314 48.1
Zm00001eb428540 Zea mays HOM05D003854 ORTHO05D004415 8.5e-67 258.1 339 42.2
CiPaw.05G074000 Carya illinoinensis HOM05D003854 ORTHO05D004415 1.4e-66 257.3 340 44.7
CDE04G0582 Ceratophyllum demersum HOM05D003854 ORTHO05D004415 1.4e-66 257.3 339 44.0
HPP92_014428 Vanilla planifolia HOM05D003854 ORTHO05D004415 9.4e-66 254.6 282 46.5
Lsat_1_v5_gn_3_44301 Lactuca sativa HOM05D003854 ORTHO05D004415 7.9e-65 251.5 322 43.5
A03p45880 Brassica napus HOM05D003854 ORTHO05D004415 1.0e-64 251.1 337 43.3
C03p57260 Brassica napus HOM05D003854 ORTHO05D004415 1.0e-64 251.1 327 45.3
BolC3t18002H Brassica oleracea HOM05D003854 ORTHO05D004415 1.0e-64 251.1 327 45.3
Eucgr.H01470 Eucalyptus grandis HOM05D003854 ORTHO05D004415 2.3e-64 250.0 246 53.7
BcaC01g03007 Brassica carinata HOM05D003854 ORTHO05D004415 3.3e-63 246.1 337 42.4
C03p57250 Brassica napus HOM05D003854 ORTHO05D004415 3.3e-63 246.1 337 42.4
BcaC04g23014 Brassica carinata HOM05D003854 ORTHO05D004415 4.4e-63 245.7 313 45.4
BraA03t13718Z Brassica rapa HOM05D003854 ORTHO05D004415 9.7e-63 244.6 360 40.8
A03p45890 Brassica napus HOM05D003854 ORTHO05D004415 2.2e-62 243.4 340 44.4
Peaxi162Scf00016g00041 Petunia axillaris HOM05D003854 ORTHO05D004415 1.4e-61 240.7 323 46.1
SEGI_09637 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 3.1e-61 239.6 332 40.1
Os07g0493400 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 4.1e-61 239.2 343 41.4
Os04g0576800 Oryza sativa ssp. japonica HOM05D003854 ORTHO05D004415 9.1e-61 238.0 285 45.3
BcaB08g34654 Brassica carinata HOM05D003854 ORTHO05D004415 4.5e-60 235.7 332 42.5
Gorai.001G243600 Gossypium raimondii HOM05D003854 ORTHO05D004415 5.0e-59 232.3 299 44.5
A07p04500 Brassica napus HOM05D003854 ORTHO05D004415 3.2e-58 229.6 296 42.9
Lsat_1_v5_gn_3_44541 Lactuca sativa HOM05D003854 ORTHO05D004415 7.2e-58 228.4 319 42.3
arahy.Tifrunner.gnm1.ann1.DJ2H3Y Arachis hypogaea HOM05D003854 ORTHO05D004415 6.1e-57 225.3 341 42.2
Ah.01g018700 Amaranthus hybridus HOM05D003854 ORTHO05D004415 2.3e-56 223.4 195 59.0
RcHm_v2.0_Chr6g0268321 Rosa chinensis HOM05D003854 ORTHO05D004415 5.2e-56 222.2 245 49.8
FvH4_2g10631 Fragaria vesca HOM05D003854 ORTHO05D004415 2.8e-54 216.5 272 46.7
Sp3g29780 Schrenkiella parvula HOM05D003854 ORTHO05D004415 5.3e-53 212.2 249 49.4
Nitab4.5_0008276g0050 Nicotiana tabacum HOM05D003854 ORTHO05D004415 2.0e-52 210.3 247 49.4
SMO367G0753 Selaginella moellendorffii HOM05D003854 ORTHO05D004415 7.7e-52 208.4 340 37.4
Glyma.12G036600 Glycine max HOM05D003854 ORTHO05D004415 1.7e-51 207.2 250 47.2
CSS0003544 Camellia sinensis var. sinensis HOM05D003854 ORTHO05D004415 5.0e-51 205.7 202 54.0
Gohir.A13G086490 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.6e-49 200.7 240 46.2
HanXRQChr17g0544071 Helianthus annuus HOM05D003854 ORTHO05D004415 3.6e-49 199.5 313 38.3
Atru.chr5.3158 Acer truncatum HOM05D003854 ORTHO05D004415 6.5e-43 178.7 169 52.7
Atru.chr5.3157 Acer truncatum HOM05D003854 ORTHO05D004415 2.1e-41 173.7 168 54.2
FAN20G2911 Fragaria x ananassa HOM05D003854 ORTHO05D004415 4.7e-41 172.6 169 54.4
arahy.Tifrunner.gnm1.ann1.EIL6RR Arachis hypogaea HOM05D003854 ORTHO05D004415 1.3e-38 164.5 270 40.0
BolC3t18001H Brassica oleracea HOM05D003854 ORTHO05D004415 3.7e-38 162.9 429 30.5
AUR62010373 Chenopodium quinoa HOM05D003854 ORTHO05D004415 1.8e-37 160.6 166 50.6
Zm00001eb073390 Zea mays HOM05D003854 ORTHO05D004415 2.4e-37 160.2 254 38.2
DCAR_029109 Daucus carota HOM05D003854 ORTHO05D004415 5.0e-35 152.5 169 49.7
arahy.Tifrunner.gnm1.ann1.VP2AIV Arachis hypogaea HOM05D003854 ORTHO05D004415 4.7e-33 146.0 241 40.2
Mapoly0130s0019 Marchantia polymorpha HOM05D003854 ORTHO05D004415 1.5e-31 141.0 344 28.8
Pp3c2_14820 Physcomitrium patens HOM05D003854 ORTHO05D004415 3.4e-31 139.8 370 29.5
unitig_32.g11228 Utricularia gibba HOM05D003854 ORTHO05D004415 1.2e-28 131.3 177 42.9
FAN15G1606 Fragaria x ananassa HOM05D003854 ORTHO05D004415 2.5e-26 123.6 216 37.5
TAR628G1389 Trochodendron aralioides HOM05D003854 ORTHO05D004415 4.3e-26 122.9 143 47.6
MELO3C028750.2 Cucumis melo HOM05D003854 ORTHO05D004415 6.2e-25 119.0 131 47.3
BraA03t13719Z Brassica rapa HOM05D003854 ORTHO05D004415 8.0e-25 118.6 212 39.2
CBR_g38102 Chara braunii HOM05D003854 ORTHO05D004415 6.6e-19 99.0 227 32.6
SEGI_30689 Sequoiadendron giganteum HOM05D003854 ORTHO05D004415 8.6e-19 98.6 138 39.9
RcHm_v2.0_Chr6g0268311 Rosa chinensis HOM05D003854 ORTHO05D004415 3.3e-18 96.7 55 80.0
Sabra04G0109800 Salix brachista HOM05D003854 ORTHO05D004415 1.1e-16 91.7 58 70.7
Gohir.A13G086535 Gossypium hirsutum HOM05D003854 ORTHO05D004415 1.5e-15 87.8 60 66.7
HanXRQChr17g0544321 Helianthus annuus HOM05D003854 ORTHO05D004415 1.4e-13 81.3 60 63.3
Thecc.02G074000 Theobroma cacao HOM05D003854 ORTHO05D004415 1.3e-11 74.7 129 40.3
AT3G43840 Arabidopsis thaliana HOM05D003854 ORTHO05D004415 6.6e-11 72.4 44 70.5
Actinidia00577 Actinidia chinensis HOM05D003854 ORTHO05D004415 5.8e-07 59.3 52 53.8
Cre17.g720950 Chlamydomonas reinhardtii HOM05D003854 ORTHO05D004415 8.4e-06 55.5 275 26.2


User provided reference genes

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