Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0005240 Simmondsia chinensis HOM05D007387 ORTHO05D009321 4.2e-65 251.5 159 100.0
arahy.Tifrunner.gnm1.ann1.WH0Y0U Arachis hypogaea HOM05D007387 ORTHO05D009321 2.1e-16 89.7 62 64.5
Glyma.11G113100 Glycine max HOM05D007387 ORTHO05D009321 2.1e-16 89.7 56 67.9
FAN15G3112 Fragaria x ananassa HOM05D007387 ORTHO05D009321 4.8e-16 88.6 62 62.9
FAN24G0663 Fragaria x ananassa HOM05D007387 ORTHO05D009321 4.8e-16 88.6 62 62.9
ClCG02G004690 Citrullus lanatus HOM05D007387 ORTHO05D009321 6.2e-16 88.2 61 63.9
MELO3C013435.2 Cucumis melo HOM05D007387 ORTHO05D009321 6.2e-16 88.2 61 63.9
CsaV3_7G000220 Cucumis sativus L. HOM05D007387 ORTHO05D009321 8.1e-16 87.8 77 58.4
FvH4_2g10040 Fragaria vesca HOM05D007387 ORTHO05D009321 8.1e-16 87.8 62 62.9
RcHm_v2.0_Chr6g0266971 Rosa chinensis HOM05D007387 ORTHO05D009321 1.4e-15 87.0 62 62.9
VMungo1127G0459 Vigna mungo HOM05D007387 ORTHO05D009321 1.8e-15 86.7 56 66.1
FAN27G1365 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.4e-15 86.3 62 61.3
Glyma.12G039000 Glycine max HOM05D007387 ORTHO05D009321 2.4e-15 86.3 56 66.1
Manes.11G087600 Manihot esculenta HOM05D007387 ORTHO05D009321 4.0e-15 85.5 56 67.9
Phvul.011G041100 Phaseolus vulgaris HOM05D007387 ORTHO05D009321 4.0e-15 85.5 56 66.1
Prupe.8G088200 Prunus persica HOM05D007387 ORTHO05D009321 5.3e-15 85.1 56 66.1
Sed0000236 Sechium edule HOM05D007387 ORTHO05D009321 9.0e-15 84.3 59 64.4
TWI31G1242 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 9.0e-15 84.3 55 65.5
TWI79G0383 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 9.0e-15 84.3 55 67.3
Atru.chr5.3107 Acer truncatum HOM05D007387 ORTHO05D009321 1.5e-14 83.6 56 69.6
Sabra04G0107500 Salix brachista HOM05D007387 ORTHO05D009321 1.5e-14 83.6 79 54.4
Sed0010335 Sechium edule HOM05D007387 ORTHO05D009321 2.6e-14 82.8 55 65.5
MD10G1066200 Malus domestica HOM05D007387 ORTHO05D009321 5.8e-14 81.6 62 58.1
Potri.004G160700 Populus trichocarpa HOM05D007387 ORTHO05D009321 5.8e-14 81.6 56 64.3
Potri.009G121700 Populus trichocarpa HOM05D007387 ORTHO05D009321 7.6e-14 81.3 56 64.3
Cpa.g.sc139.28 Carica papaya HOM05D007387 ORTHO05D009321 9.9e-14 80.9 62 58.1
Oeu055620.1 Olea europaea HOM05D007387 ORTHO05D009321 9.9e-14 80.9 150 34.0
Sabra09G0094000 Salix brachista HOM05D007387 ORTHO05D009321 1.3e-13 80.5 56 64.3
Cfa005072 Carpinus fangiana HOM05D007387 ORTHO05D009321 1.7e-13 80.1 56 62.5
Duzib132G0100 Durio zibethinus HOM05D007387 ORTHO05D009321 2.9e-13 79.3 151 45.7
MD05G1058600 Malus domestica HOM05D007387 ORTHO05D009321 3.8e-13 79.0 62 58.1
EL10Ac9g21673 Beta vulgaris HOM05D007387 ORTHO05D009321 4.9e-13 78.6 218 34.4
Oeu008575.1 Olea europaea HOM05D007387 ORTHO05D009321 4.9e-13 78.6 56 60.7
vmacro02067 Vaccinium macrocarpon HOM05D007387 ORTHO05D009321 4.9e-13 78.6 55 63.6
CAN.G170.83 Capsicum annuum HOM05D007387 ORTHO05D009321 6.4e-13 78.2 150 43.3
Actinidia11742 Actinidia chinensis HOM05D007387 ORTHO05D009321 1.1e-12 77.4 154 44.2
Ca_20916_v3 Cicer arietinum L. HOM05D007387 ORTHO05D009321 1.1e-12 77.4 154 36.4
Dinv42018 Davidia involucrata HOM05D007387 ORTHO05D009321 1.1e-12 77.4 55 63.6
Gohir.A04G124100 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.9e-12 76.6 62 58.1
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.9e-12 76.6 61 55.7
CANSAT11G0211 Cannabis sativa HOM05D007387 ORTHO05D009321 2.4e-12 76.3 56 62.5
QL11p045571 Quercus lobata HOM05D007387 ORTHO05D009321 2.4e-12 76.3 52 61.5
HanXRQChr16g0505141 Helianthus annuus HOM05D007387 ORTHO05D009321 3.2e-12 75.9 53 62.3
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 3.2e-12 75.9 61 55.7
Psat7g182600 Pisum sativum HOM05D007387 ORTHO05D009321 3.2e-12 75.9 53 58.5
CiPaw.06G131100 Carya illinoinensis HOM05D007387 ORTHO05D009321 4.2e-12 75.5 53 60.4
Gohir.D04G166200 Gossypium hirsutum HOM05D007387 ORTHO05D009321 7.1e-12 74.7 62 56.5
Gorai.012G154600 Gossypium raimondii HOM05D007387 ORTHO05D009321 7.1e-12 74.7 62 56.5
Ah.01g018920 Amaranthus hybridus HOM05D001785 ORTHO05D001933 9.3e-12 74.3 53 56.6
arahy.Tifrunner.gnm1.ann1.TWZZ0X Arachis hypogaea HOM05D007387 ORTHO05D009321 9.3e-12 74.3 50 64.0
Cc02_g17100 Coffea canephora HOM05D007387 ORTHO05D009321 9.3e-12 74.3 80 51.2
Lalb_Chr03g0025431 Lupinus albus HOM05D007387 ORTHO05D009321 9.3e-12 74.3 59 54.2
HanXRQChr04g0127721 Helianthus annuus HOM05D007387 ORTHO05D009321 1.2e-11 73.9 53 62.3
Solyc01g110150.2 Solanum lycopersicum HOM05D007387 ORTHO05D009321 1.2e-11 73.9 55 58.2
Actinidia00563 Actinidia chinensis HOM05D001785 ORTHO05D001933 1.6e-11 73.6 140 40.7
ECA236G2541 Erigeron canadensis HOM05D007387 ORTHO05D009321 1.6e-11 73.6 53 62.3
Medtr4g071120 Medicago truncatula HOM05D007387 ORTHO05D009321 2.1e-11 73.2 53 56.6
PGR142G2532 Punica granatum HOM05D007387 ORTHO05D009321 2.1e-11 73.2 54 61.1
Eucgr.I01309 Eucalyptus grandis HOM05D007387 ORTHO05D009321 2.7e-11 72.8 54 61.1
Lsat_1_v5_gn_7_91901 Lactuca sativa HOM05D007387 ORTHO05D009321 2.7e-11 72.8 52 61.5
Lj3g0012874 Lotus japonicus HOM05D007387 ORTHO05D009321 4.6e-11 72.0 155 40.0
Lalb_Chr19g0138881 Lupinus albus HOM05D007387 ORTHO05D009321 6.0e-11 71.6 53 56.6
Sopen01g052310 Solanum pennellii HOM05D007387 ORTHO05D009321 1.3e-10 70.5 53 56.6
PGSC0003DMG400030970 Solanum tuberosum HOM05D007387 ORTHO05D009321 3.0e-10 69.3 158 36.7
Thecc.02G078400 Theobroma cacao HOM05D007387 ORTHO05D009321 3.9e-10 68.9 151 34.4
DCAR_003650 Daucus carota HOM05D007387 ORTHO05D009321 8.7e-10 67.8 53 56.6
Gohir.A12G041900 Gossypium hirsutum HOM05D007387 ORTHO05D009321 8.7e-10 67.8 53 62.3
Hma1.2p1_0066F.1_g035940 Hydrangea macrophylla HOM05D007387 ORTHO05D009321 8.7e-10 67.8 53 64.2
THA.LOC104807296 Tarenaya hassleriana HOM05D007387 ORTHO05D009321 8.7e-10 67.8 53 58.5
Duzib248G1112 Durio zibethinus HOM05D007387 ORTHO05D009321 1.1e-09 67.4 54 59.3
Sp7g32420 Schrenkiella parvula HOM05D007387 ORTHO05D009321 1.1e-09 67.4 55 56.4
Gohir.D12G030300 Gossypium hirsutum HOM05D007387 ORTHO05D009321 1.9e-09 66.6 140 35.7
TPR.G30501 Trifolium pratense HOM05D000711 ORTHO05D000545 2.5e-09 66.2 90 37.8
FAN25G2925 Fragaria x ananassa HOM05D007387 ORTHO05D009321 5.6e-09 65.1 46 63.0
Aa31LG2G15890 Aethionema arabicum HOM05D007387 ORTHO05D009321 7.3e-09 64.7 55 54.5
Peaxi162Scf00003g00073 Petunia axillaris HOM05D007387 ORTHO05D009321 1.3e-08 63.9 50 58.0
TWI75G1034 Tripterygium wilfordii HOM05D007387 ORTHO05D009321 1.6e-08 63.5 49 59.2
A01p03860 Brassica napus HOM05D007387 ORTHO05D009321 2.1e-08 63.2 53 54.7
Thhalv10026183m.g Eutrema salsugineum HOM05D007387 ORTHO05D009321 2.1e-08 63.2 55 54.5
FAN15G0178 Fragaria x ananassa HOM05D007387 ORTHO05D009321 2.1e-08 63.2 47 57.4
DCAR_009554 Daucus carota HOM05D007387 ORTHO05D009321 2.8e-08 62.8 53 52.8
Ciclev10029309m.g Citrus clementina HOM05D007387 ORTHO05D009321 3.6e-08 62.4 166 34.3
AL7G16570 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 8.1e-08 61.2 56 57.1
BcaNung04916 Brassica carinata HOM05D007387 ORTHO05D009321 1.4e-07 60.5 58 55.2
BcaNung04919 Brassica carinata HOM05D007387 ORTHO05D009321 1.4e-07 60.5 58 55.2
FAN20G0098 Fragaria x ananassa HOM05D007387 ORTHO05D009321 4.0e-07 58.9 47 55.3
CARHR106690 Cardamine hirsuta HOM05D007387 ORTHO05D009321 9.0e-07 57.8 54 48.1
FAN21G1657 Fragaria x ananassa HOM05D007387 ORTHO05D009321 9.0e-07 57.8 47 53.2
Carub.0007s0565 Capsella rubella HOM05D007387 ORTHO05D009321 1.5e-06 57.0 55 52.7
BcaNung00681 Brassica carinata HOM05D007387 ORTHO05D009321 2.6e-06 56.2 81 45.7
C01p04170 Brassica napus HOM05D007387 ORTHO05D009321 2.6e-06 56.2 81 45.7
BolC1t00405H Brassica oleracea HOM05D007387 ORTHO05D009321 2.6e-06 56.2 81 45.7
BraA01t00373Z Brassica rapa HOM05D007387 ORTHO05D009321 3.4e-06 55.8 81 45.7
AL3G52630 Arabidopsis lyrata HOM05D007387 ORTHO05D009321 5.8e-06 55.1 53 50.9
Actinidia12738 Actinidia chinensis HOM05D007387 ORTHO05D009321 7.6e-06 54.7 54 51.9
Actinidia27864 Actinidia chinensis HOM05D007387 ORTHO05D009321 7.6e-06 54.7 54 51.9
Peaxi162Scf00016g00025 Petunia axillaris HOM05D007387 ORTHO05D009321 7.6e-06 54.7 53 54.7
Haze_02310 Corylus avellana HOM05D007387 ORTHO05D009321 9.9e-06 54.3 38 65.8


User provided reference genes

Program Settings