Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 2.5e-118 428.7 206 100.0
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 6.9e-76 287.7 200 70.0
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 4.5e-75 285.0 197 70.1
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.3e-74 283.5 188 73.9
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.0e-74 281.6 199 71.4
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 6.5e-74 281.2 200 69.5
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 6.5e-74 281.2 190 72.1
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.1e-73 280.4 201 70.6
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 3.2e-73 278.9 185 71.9
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 4.2e-73 278.5 201 69.2
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 2.1e-72 276.2 199 69.3
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 1.8e-71 273.1 191 69.1
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.9e-70 269.6 185 69.2
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 3.3e-70 268.9 194 68.0
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 3.3e-70 268.9 199 65.3
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 1.3e-69 266.9 197 66.0
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 3.7e-69 265.4 183 70.5
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 8.2e-69 264.2 195 67.7
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.4e-68 262.7 197 66.5
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 5.3e-68 261.5 189 69.3
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 9.1e-68 260.8 183 68.9
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 9.1e-68 260.8 183 69.4
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 9.1e-68 260.8 183 69.4
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 2.0e-67 259.6 196 66.8
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 2.6e-67 259.2 187 67.9
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 7.7e-67 257.7 204 65.2
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 1.3e-66 256.9 191 62.8
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 1.7e-66 256.5 196 64.8
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 1.7e-66 256.5 193 66.3
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 2.2e-66 256.1 210 63.3
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 2.9e-66 255.8 198 65.2
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 5.0e-66 255.0 200 64.0
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 5.0e-66 255.0 191 64.4
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 6.5e-66 254.6 198 64.6
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.9e-65 253.1 194 68.0
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 1.9e-65 253.1 184 69.0
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 4.2e-65 251.9 191 61.8
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 5.5e-65 251.5 270 51.9
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 5.5e-65 251.5 198 65.7
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 1.2e-64 250.4 184 66.3
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 1.6e-64 250.0 193 62.2
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 2.1e-64 249.6 190 65.3
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 2.1e-64 249.6 199 65.8
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 2.1e-64 249.6 196 62.2
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 2.1e-64 249.6 196 61.7
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.7e-64 249.2 188 64.9
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.6e-64 248.8 186 64.5
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 3.6e-64 248.8 198 63.6
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 4.6e-64 248.4 186 64.5
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.6e-64 248.4 208 60.6
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.8e-63 246.5 211 60.2
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 1.8e-63 246.5 187 63.1
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 2.3e-63 246.1 185 63.8
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 2.3e-63 246.1 188 67.0
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 3.0e-63 245.7 194 64.9
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 5.1e-63 245.0 201 62.2
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 8.8e-63 244.2 189 61.9
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 1.1e-62 243.8 188 65.4
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 1.1e-62 243.8 192 60.9
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 4.4e-62 241.9 188 62.8
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 1.3e-61 240.4 197 64.0
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 2.2e-61 239.6 180 62.2
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 2.2e-61 239.6 124 85.5
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 1.1e-60 237.3 191 63.9
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 1.4e-60 236.9 193 62.7
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.4e-60 236.1 195 61.0
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 6.9e-60 234.6 175 65.7
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 6.9e-60 234.6 196 62.2
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 2.0e-59 233.0 260 52.3
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 2.0e-59 233.0 191 60.2
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 2.6e-59 232.6 181 61.3
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 4.5e-59 231.9 229 53.7
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 5.9e-59 231.5 229 53.7
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.0e-58 230.7 115 88.7
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 1.0e-58 230.7 120 86.7
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 1.0e-58 230.7 181 60.2
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 1.9e-57 226.5 128 78.9
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 9.4e-57 224.2 194 55.7
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 9.4e-57 224.2 125 80.0
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.2e-56 223.8 197 60.9
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 1.6e-56 223.4 200 58.5
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 1.4e-55 220.3 192 60.4
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.4e-55 220.3 188 60.6
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 3.9e-55 218.8 172 62.8
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 3.3e-54 215.7 136 74.3
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 5.7e-54 214.9 145 68.3
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.7e-53 213.4 122 77.9
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.2e-53 213.0 142 66.2
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.8e-53 212.6 197 57.9
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 3.5e-51 205.7 189 55.0
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 3.5e-51 205.7 196 55.6
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.0e-50 204.1 120 71.7
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.0e-50 204.1 148 64.2
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 2.2e-50 203.0 190 56.8
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 3.8e-50 202.2 195 52.8
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 1.9e-49 199.9 114 76.3
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 2.1e-48 196.4 172 63.4
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.4e-47 193.7 114 71.9
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 1.8e-47 193.4 162 59.3
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.2e-46 190.7 189 55.6
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.2e-46 190.7 156 60.9
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.7e-45 186.8 156 56.4
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.7e-45 186.8 136 66.2
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 8.2e-45 184.5 99 82.8
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 7.7e-43 177.9 113 61.1
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 8.5e-42 174.5 253 40.7
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 1.1e-41 174.1 157 56.1
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 7.2e-41 171.4 111 65.8
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 4.7e-40 168.7 113 59.3
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 6.8e-39 164.9 154 57.1
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 2.0e-38 163.3 131 64.1
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 2.6e-38 162.9 130 64.6
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 3.4e-38 162.5 259 42.5
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.8e-37 159.5 201 45.3
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.1e-36 155.6 128 61.7
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 2.6e-30 136.3 137 54.0
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.3e-29 134.0 102 54.9
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.7e-27 126.3 156 52.6
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 2.7e-27 126.3 125 43.2
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 2.3e-26 123.2 63 85.7
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 6.6e-26 121.7 93 63.4
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.1e-25 120.9 100 44.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 2.1e-24 116.7 106 45.3
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 6.1e-24 115.2 63 79.4
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 6.1e-24 115.2 96 51.0
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.5e-22 110.5 57 80.7
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 3.4e-22 109.4 95 48.4
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 5.4e-20 102.1 110 52.7
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 6.0e-19 98.6 93 40.9
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 7.8e-19 98.2 104 44.2
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 1.1e-17 94.4 110 50.9
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 5.8e-14 82.0 91 47.3
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.7e-13 80.5 74 48.6
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 2.0e-11 73.6 112 38.4
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 3.5e-11 72.8 123 39.8
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 7.8e-11 71.6 71 49.3
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 5.0e-10 68.9 115 37.4
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.9e-09 67.0 35 77.1
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 1.9e-09 67.0 35 77.1
Atru.chr9.1169 Acer truncatum HOM05D003028 ORTHO05D037933 8.9e-07 58.2 30 80.0
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 4.4e-06 55.8 109 35.8


User provided reference genes

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