Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002970 Simmondsia chinensis HOM05D003426 ORTHO05D003816 9.8e-189 663.7 437 100.0
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 3.1e-33 147.1 420 31.7
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 5.3e-33 146.4 459 29.8
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 1.0e-31 142.1 428 32.2
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.5e-27 128.3 362 35.6
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 2.5e-27 127.5 350 38.6
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 3.1e-25 120.6 413 32.4
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 7.6e-24 115.9 485 30.5
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 3.0e-20 104.0 387 31.5
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 7.4e-19 99.4 357 28.9
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 2.2e-18 97.8 313 31.3
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 3.7e-18 97.1 359 29.5
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 3.7e-18 97.1 358 33.8
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 3.7e-18 97.1 366 28.7
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 8.2e-18 95.9 431 26.9
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.8e-17 94.7 358 26.3
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 1.2e-16 92.0 168 31.0
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 2.6e-16 90.9 347 31.4
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 4.5e-16 90.1 361 31.6
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 4.5e-16 90.1 368 27.7
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 7.7e-16 89.4 370 27.3
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 1.0e-15 89.0 208 32.2
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 1.3e-15 88.6 308 29.9
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 1.7e-15 88.2 484 25.2
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 3.8e-15 87.0 372 26.3
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 3.8e-15 87.0 197 33.0
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 5.0e-15 86.7 350 27.4
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 6.5e-15 86.3 183 32.8
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.1e-14 85.5 183 32.8
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 1.4e-14 85.1 206 32.5
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 1.4e-14 85.1 343 31.5
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 1.9e-14 84.7 207 28.5
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.9e-14 84.7 495 25.7
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 3.2e-14 84.0 346 26.3
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 3.2e-14 84.0 182 32.4
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 4.2e-14 83.6 225 30.7
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 7.2e-14 82.8 349 25.8
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 1.6e-13 81.6 192 32.3
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 2.1e-13 81.3 206 29.6
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 2.1e-13 81.3 368 24.2
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 6.1e-13 79.7 369 25.5
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 1.0e-12 79.0 371 24.5
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 1.0e-12 79.0 206 28.6
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 2.3e-12 77.8 178 30.3
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 3.0e-12 77.4 360 27.2
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.9e-12 77.0 381 25.7
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 5.1e-12 76.6 352 31.5
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.1e-11 75.5 202 32.2
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.1e-11 75.5 361 31.3
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 1.5e-11 75.1 339 26.5
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 1.5e-11 75.1 182 27.5
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.5e-11 75.1 216 26.9
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.5e-11 75.1 196 29.1
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 1.5e-11 75.1 360 24.7
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 3.3e-11 73.9 174 31.0
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 4.3e-11 73.6 191 31.9
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 4.3e-11 73.6 175 28.6
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 4.3e-11 73.6 158 31.0
SGA_v2.0_scaffold83G26387 Striga asiatica HOM05D000650 ORTHO05D000735 4.3e-11 73.6 147 30.6
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 5.7e-11 73.2 163 33.7
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 5.7e-11 73.2 362 27.9
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 1.7e-10 71.6 319 24.5
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.2e-10 71.2 121 37.2
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 2.8e-10 70.9 246 27.2
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 2.8e-10 70.9 163 30.1
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 2.8e-10 70.9 182 34.1
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 3.7e-10 70.5 236 27.1
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 4.8e-10 70.1 175 30.9
Nitab4.5_0001259g0050 Nicotiana tabacum HOM05D000650 ORTHO05D007302 4.8e-10 70.1 146 32.2
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 8.2e-10 69.3 191 28.8
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 1.1e-09 68.9 359 24.8
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 1.8e-09 68.2 362 25.4
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 2.4e-09 67.8 156 32.1
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 2.4e-09 67.8 206 29.6
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 2.4e-09 67.8 178 30.3
Sed0007563 Sechium edule HOM05D003426 ORTHO05D003816 5.3e-09 66.6 176 30.1
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 6.9e-09 66.2 228 37.3
Lj5A228T42 Lonicera japonica HOM05D000650 ORTHO05D007302 9.1e-09 65.9 134 29.9
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 9.1e-09 65.9 173 31.2
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.2e-08 65.5 156 30.8
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 1.2e-08 65.5 375 29.3
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 1.5e-08 65.1 200 26.5
Peaxi162Scf00003g03237 Petunia axillaris HOM05D021013 ORTHO05D007302 1.5e-08 65.1 169 29.0
Lj5A228T44 Lonicera japonica HOM05D003426 ORTHO05D007302 2.0e-08 64.7 131 29.8
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 2.6e-08 64.3 240 23.3
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 2.6e-08 64.3 240 23.3
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 2.6e-08 64.3 168 31.0
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.6e-08 64.3 284 28.5
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 2.6e-08 64.3 174 27.0
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 4.5e-08 63.5 376 29.0
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 4.5e-08 63.5 166 26.5
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.9e-08 63.2 137 28.5
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 7.7e-08 62.8 157 26.8
Haze_10696 Corylus avellana HOM05D000650 ORTHO05D007302 1.0e-07 62.4 118 32.2
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 1.0e-07 62.4 132 32.6
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 1.3e-07 62.0 160 27.5
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 1.3e-07 62.0 118 37.3
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 1.3e-07 62.0 130 34.6
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 1.7e-07 61.6 237 26.6
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.7e-07 61.6 377 27.3
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.7e-07 61.6 237 26.6
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.7e-07 61.6 127 29.9
MELO3C010212.2 Cucumis melo HOM05D003426 ORTHO05D003816 2.2e-07 61.2 197 28.4
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 2.2e-07 61.2 182 25.3
TWI14G0488 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 2.2e-07 61.2 119 29.4
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.9e-07 60.8 229 25.3
PGSC0003DMG400029015 Solanum tuberosum HOM05D000650 ORTHO05D007302 2.9e-07 60.8 143 28.0
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 5.0e-07 60.1 209 23.9
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 5.0e-07 60.1 209 28.2
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 8.5e-07 59.3 202 25.2
COL.COLO4_32413 Corchorus olitorius HOM05D000027 ORTHO05D001579 8.5e-07 59.3 130 30.0
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 8.5e-07 59.3 148 29.7
A04p18340 Brassica napus HOM05D012895 ORTHO05D014428 1.1e-06 58.9 182 30.8
BraA04t17445Z Brassica rapa HOM05D012895 ORTHO05D014428 1.1e-06 58.9 182 30.8
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.1e-06 58.9 326 28.8
Atru.chr6.1308 Acer truncatum HOM05D000650 ORTHO05D007302 1.4e-06 58.5 162 24.7
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.4e-06 58.5 355 27.3
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 1.4e-06 58.5 72 38.9
Lsat_1_v5_gn_5_90301 Lactuca sativa HOM05D003426 ORTHO05D003816 1.9e-06 58.2 126 31.0
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 2.5e-06 57.8 158 25.9
BcaC02g08512 Brassica carinata HOM05D012895 ORTHO05D014428 3.2e-06 57.4 182 30.8
BolC4t26912H Brassica oleracea HOM05D012895 ORTHO05D014428 3.2e-06 57.4 182 30.8
Glyma.08G066700 Glycine max HOM05D000650 ORTHO05D007302 4.2e-06 57.0 146 31.5
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 4.2e-06 57.0 207 25.6
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 4.2e-06 57.0 99 31.3
Solyc10g047670.2 Solanum lycopersicum HOM05D000650 ORTHO05D007302 4.2e-06 57.0 150 25.3
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 4.2e-06 57.0 140 26.4
VMungo0251G0586 Vigna mungo HOM05D000650 ORTHO05D007302 4.2e-06 57.0 124 31.5
C04p53570 Brassica napus HOM05D012895 ORTHO05D014428 5.5e-06 56.6 188 29.3
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 5.5e-06 56.6 192 29.2
Manes.10G096200 Manihot esculenta HOM05D000650 ORTHO05D014428 5.5e-06 56.6 125 30.4
Sopen10g018090 Solanum pennellii HOM05D000650 ORTHO05D007302 5.5e-06 56.6 150 24.0
PSO675G1450 Papaver somniferum HOM05D003426 ORTHO05D003816 7.2e-06 56.2 90 33.3
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 7.2e-06 56.2 135 28.1
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 9.4e-06 55.8 271 26.6
RcHm_v2.0_Chr2g0085511 Rosa chinensis HOM05D003426 ORTHO05D003816 9.4e-06 55.8 390 28.7
TWI59G0327 Tripterygium wilfordii HOM05D000650 ORTHO05D007302 9.4e-06 55.8 166 24.1


User provided reference genes

Program Settings