Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 2.1e-160 568.9 277 100.0
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 3.5e-99 365.5 275 67.3
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 9.6e-97 357.5 277 65.7
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 4.7e-96 355.1 282 63.8
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 5.1e-90 335.1 283 60.8
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 3.3e-89 332.4 288 61.5
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 3.6e-88 328.9 281 60.5
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 3.6e-88 328.9 284 60.6
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 6.2e-88 328.2 275 62.5
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 8.1e-88 327.8 281 60.9
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 1.1e-87 327.4 280 61.1
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 9.0e-87 324.3 292 59.2
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 1.5e-86 323.6 281 60.9
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 9.9e-86 320.9 288 57.6
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 9.9e-86 320.9 288 57.6
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 1.3e-85 320.5 279 59.5
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 2.9e-85 319.3 283 60.1
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 2.9e-85 319.3 281 61.6
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 3.8e-85 318.9 286 57.7
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 6.4e-85 318.2 280 60.7
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 8.4e-85 317.8 281 59.8
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 7.1e-84 314.7 277 59.9
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 1.2e-83 313.9 279 58.8
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 3.5e-83 312.4 277 59.6
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 3.5e-83 312.4 277 59.6
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 4.6e-83 312.0 283 59.7
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 7.9e-83 311.2 282 59.2
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 1.3e-82 310.5 277 58.8
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.3e-82 310.5 289 56.7
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 1.7e-82 310.1 280 59.3
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 1.7e-82 310.1 279 57.7
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 1.7e-82 310.1 280 60.7
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 3.0e-82 309.3 281 59.1
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 3.9e-82 308.9 283 56.2
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 8.7e-82 307.8 284 58.5
AUR62028338 Chenopodium quinoa HOM05D000417 ORTHO05D007886 1.5e-81 307.0 275 58.5
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 7.4e-81 304.7 285 55.4
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 7.4e-81 304.7 281 57.7
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 3.6e-80 302.4 285 57.2
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 6.2e-80 301.6 283 55.8
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 1.8e-79 300.1 286 55.9
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 5.3e-79 298.5 273 56.8
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 2.6e-78 296.2 275 55.6
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 3.4e-78 295.8 280 56.8
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 2.9e-77 292.7 275 57.5
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 4.9e-77 292.0 276 55.1
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 6.4e-77 291.6 275 55.3
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 3.5e-75 285.8 286 53.5
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 4.6e-75 285.4 286 53.5
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.0e-75 285.0 279 53.4
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 1.8e-74 283.5 288 52.4
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 7.4e-73 278.1 279 52.7
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 7.4e-73 278.1 279 52.7
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 9.6e-73 277.7 280 52.1
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 3.7e-72 275.8 293 52.2
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 3.7e-72 275.8 280 54.6
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 6.2e-72 275.0 278 53.6
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 4.5e-70 268.9 284 49.3
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 5.8e-70 268.5 270 54.4
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 6.5e-69 265.0 280 52.5
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 2.5e-68 263.1 281 50.5
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 5.5e-68 261.9 257 54.5
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 1.0e-66 257.7 247 56.7
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 1.8e-66 256.9 284 47.9
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 3.0e-66 256.1 275 53.5
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 6.7e-66 255.0 281 50.9
Sabra06G0167400 Salix brachista HOM05D006517 ORTHO05D007886 5.7e-65 251.9 297 48.1
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 2.1e-64 250.0 282 49.6
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 2.1e-64 250.0 282 49.3
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 6.9e-63 245.0 242 56.6
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 9.0e-63 244.6 281 50.2
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.5e-62 243.8 279 48.4
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 3.4e-62 242.7 285 49.8
Actinidia39601 Actinidia chinensis HOM05D006517 ORTHO05D007886 5.9e-62 241.9 237 56.5
Psat4g020160 Pisum sativum HOM05D006517 ORTHO05D007886 1.7e-61 240.4 240 56.2
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 1.7e-61 240.4 261 52.9
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 7.2e-60 235.0 289 43.3
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 4.6e-59 232.3 208 59.6
arahy.Tifrunner.gnm1.ann1.0410DC Arachis hypogaea HOM05D006517 ORTHO05D007886 3.0e-58 229.6 233 52.8
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 8.7e-58 228.0 285 45.3
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 1.5e-57 227.3 251 52.6
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 1.9e-57 226.9 236 53.8
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 2.5e-57 226.5 274 46.4
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 1.4e-55 220.7 298 43.6
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 1.4e-50 204.1 279 43.4
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.7e-50 201.8 279 43.4
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 3.3e-49 199.5 232 49.1
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 5.3e-47 192.2 195 53.8
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 5.9e-46 188.7 205 52.2
HPP92_002241 Vanilla planifolia HOM05D000872 ORTHO05D000777 4.2e-44 182.6 237 43.9
DCAR_010521 Daucus carota HOM05D006517 ORTHO05D007886 7.2e-44 181.8 293 40.3
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 7.2e-44 181.8 286 38.1
Solyc06g031680.2 Solanum lycopersicum HOM05D006517 ORTHO05D007886 9.4e-44 181.4 169 55.0
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 5.2e-42 175.6 266 42.9
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 1.5e-41 174.1 197 51.8
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 1.5e-41 174.1 169 58.6
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 1.5e-41 174.1 169 58.6
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 2.0e-41 173.7 169 58.0
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 2.6e-41 173.3 169 58.0
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 1.3e-40 171.0 199 50.8
Sopen06g010170 Solanum pennellii HOM05D006517 ORTHO05D007886 6.3e-40 168.7 130 60.8
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 8.2e-40 168.3 198 51.0
CBR_g36802 Chara braunii HOM05D006517 ORTHO05D007886 8.2e-40 168.3 291 35.7
Cc09_g04390 Coffea canephora HOM05D006517 ORTHO05D007886 3.1e-39 166.4 147 57.8
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 2.6e-38 163.3 201 46.8
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 3.6e-35 152.9 166 54.8
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 1.4e-34 151.0 131 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2898 Anthoceros agrestis HOM05D006517 ORTHO05D007886 5.7e-33 145.6 229 38.9
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 9.7e-33 144.8 95 71.6
SEGI_24061 Sequoiadendron giganteum HOM05D006517 ORTHO05D007886 1.7e-32 144.1 195 43.1
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 2.2e-32 143.7 93 74.2
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 4.1e-31 139.4 217 41.0
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 1.5e-28 131.0 198 41.4
Cpa.g.sc82.25 Carica papaya HOM05D006517 ORTHO05D007886 4.2e-28 129.4 71 77.5
vmacro13145 Vaccinium macrocarpon HOM05D006517 ORTHO05D007886 1.6e-19 100.9 212 39.2
Peaxi162Scf00658g00031 Petunia axillaris HOM05D000115 ORTHO05D000464 1.3e-16 91.3 165 37.6
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 1.7e-13 80.9 80 53.8
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 9.5e-12 75.1 75 54.7
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 6.1e-11 72.4 48 70.8
Lsat_1_v5_gn_5_30201 Lactuca sativa HOM05D006517 ORTHO05D007886 1.8e-10 70.9 102 42.2
Lj4g0011716 Lotus japonicus HOM05D000903 ORTHO05D000731 4.1e-07 59.7 65 40.0
SGA_v2.0_scaffold4G02095 Striga asiatica HOM05D000903 ORTHO05D000731 4.1e-07 59.7 113 33.6
Glyma.13G114800 Glycine max HOM05D000903 ORTHO05D000731 5.4e-07 59.3 122 30.3
Potri.004G064400 Populus trichocarpa HOM05D000088 ORTHO05D003056 2.0e-06 57.4 93 34.4
BcaB04g18834 Brassica carinata HOM05D000903 ORTHO05D000731 2.7e-06 57.0 71 35.2
Sc18g0002870 Simmondsia chinensis HOM05D000903 ORTHO05D000731 2.7e-06 57.0 64 37.5
PSO135G0716 Papaver somniferum HOM05D000903 ORTHO05D000731 3.5e-06 56.6 80 35.0
TWI73G0176 Tripterygium wilfordii HOM05D000088 ORTHO05D003056 4.6e-06 56.2 113 31.9
Atru.chr1.4138 Acer truncatum HOM05D000903 ORTHO05D000731 5.9e-06 55.8 64 39.1
AL3G26590 Arabidopsis lyrata HOM05D000903 ORTHO05D000731 5.9e-06 55.8 71 33.8
Phvul.003G127000 Phaseolus vulgaris HOM05D000903 ORTHO05D000731 5.9e-06 55.8 122 29.5
VMungo1215G0945 Vigna mungo HOM05D000903 ORTHO05D000731 5.9e-06 55.8 122 29.5
ATR0796G252 Amborella trichopoda HOM05D000903 ORTHO05D000731 7.8e-06 55.5 59 45.8
Cfa003465 Carpinus fangiana HOM05D000903 ORTHO05D000731 7.8e-06 55.5 64 37.5
Ciclev10027324m.g Citrus clementina HOM05D000903 ORTHO05D000731 7.8e-06 55.5 64 39.1
Haze_16131 Corylus avellana HOM05D000903 ORTHO05D000731 7.8e-06 55.5 64 37.5
PSO724G0463 Papaver somniferum HOM05D000903 ORTHO05D000731 7.8e-06 55.5 88 33.0


User provided reference genes

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