Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002770 Simmondsia chinensis HOM05D005557 ORTHO05D006748 5.4e-162 574.3 299 100.0
Ciclev10009013m.g Citrus clementina HOM05D005557 ORTHO05D006748 1.4e-88 330.5 293 64.5
Sopen07g021740 Solanum pennellii HOM05D005557 ORTHO05D006748 6.7e-88 328.2 290 62.4
PGSC0003DMG400016040 Solanum tuberosum HOM05D005557 ORTHO05D006748 1.9e-87 326.6 290 61.4
Nitab4.5_0008784g0050 Nicotiana tabacum HOM05D005557 ORTHO05D006748 3.3e-87 325.9 291 62.2
Solyc07g042150.3 Solanum lycopersicum HOM05D005557 ORTHO05D006748 5.7e-87 325.1 290 62.1
Nitab4.5_0000343g0390 Nicotiana tabacum HOM05D005557 ORTHO05D006748 2.2e-86 323.2 291 60.8
Manes.03G042000 Manihot esculenta HOM05D005557 ORTHO05D006748 2.8e-86 322.8 299 61.5
Dinv42413 Davidia involucrata HOM05D005557 ORTHO05D006748 1.1e-85 320.9 289 59.9
Potri.006G139800 Populus trichocarpa HOM05D005557 ORTHO05D006748 1.4e-85 320.5 302 59.6
AUR62028302 Chenopodium quinoa HOM05D005557 ORTHO05D006748 3.1e-85 319.3 290 61.0
GSVIVG01015048001 Vitis vinifera HOM05D005557 ORTHO05D006748 1.2e-84 317.4 194 78.4
Cc06_g12460 Coffea canephora HOM05D005557 ORTHO05D006748 1.5e-84 317.0 293 59.4
Actinidia30238 Actinidia chinensis HOM05D005557 ORTHO05D006748 1.3e-83 313.9 291 60.1
CSS0017494 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 2.2e-83 313.2 303 56.8
Peaxi162Scf00880g00018 Petunia axillaris HOM05D005557 ORTHO05D006748 2.9e-83 312.8 289 59.5
Prupe.2G075400 Prunus persica HOM05D005557 ORTHO05D006748 3.8e-83 312.4 293 60.1
Thhalv10008278m.g Eutrema salsugineum HOM05D005557 ORTHO05D006748 8.5e-83 311.2 288 58.0
BolC5t30454H Brassica oleracea HOM05D005557 ORTHO05D006748 1.1e-82 310.8 288 58.7
Lj7A689T78 Lonicera japonica HOM05D005557 ORTHO05D006748 1.4e-82 310.5 289 59.9
CiPaw.03G203700 Carya illinoinensis HOM05D005557 ORTHO05D006748 1.9e-82 310.1 287 61.3
THA.LOC104815688 Tarenaya hassleriana HOM05D005557 ORTHO05D006748 2.5e-82 309.7 291 58.8
Sabra06G0109200 Salix brachista HOM05D005557 ORTHO05D006748 3.2e-82 309.3 293 59.7
TAR626G1135 Trochodendron aralioides HOM05D005557 ORTHO05D006748 3.2e-82 309.3 293 58.7
SalBow6G3747 Salvia bowleyana HOM05D005557 ORTHO05D006748 4.2e-82 308.9 231 68.0
DCAR_024765 Daucus carota HOM05D005557 ORTHO05D006748 9.4e-82 307.8 201 73.6
Lalb_Chr13g0299361 Lupinus albus HOM05D005557 ORTHO05D006748 9.4e-82 307.8 291 58.1
CAN.G32.9 Capsicum annuum HOM05D005557 ORTHO05D006748 1.6e-81 307.0 297 57.9
Migut.J00918 Erythranthe guttata HOM05D005557 ORTHO05D006748 1.6e-81 307.0 291 59.8
BcaB07g31927 Brassica carinata HOM05D005557 ORTHO05D006748 2.1e-81 306.6 296 56.8
RcHm_v2.0_Chr1g0332351 Rosa chinensis HOM05D005557 ORTHO05D006748 2.7e-81 306.2 293 57.7
Thecc.08G180200 Theobroma cacao HOM05D005557 ORTHO05D006748 2.7e-81 306.2 291 58.8
EL10Ac8g19008 Beta vulgaris HOM05D005557 ORTHO05D006748 3.6e-81 305.8 304 57.6
arahy.Tifrunner.gnm1.ann1.C56SYK Arachis hypogaea HOM05D005557 ORTHO05D006748 4.7e-81 305.4 189 77.8
BcaC05g25811 Brassica carinata HOM05D005557 ORTHO05D006748 4.7e-81 305.4 289 57.4
Sp1g17050 Schrenkiella parvula HOM05D005557 ORTHO05D006748 4.7e-81 305.4 294 58.2
TWI32G1325 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 4.7e-81 305.4 291 57.0
arahy.Tifrunner.gnm1.ann1.568RE3 Arachis hypogaea HOM05D005557 ORTHO05D006748 6.1e-81 305.1 189 77.2
Hma1.2p1_0169F.1_g074410 Hydrangea macrophylla HOM05D005557 ORTHO05D006748 6.1e-81 305.1 210 72.9
Dinv25539 Davidia involucrata HOM05D005557 ORTHO05D006748 7.9e-81 304.7 288 58.3
BcaC07g38981 Brassica carinata HOM05D005557 ORTHO05D006748 1.0e-80 304.3 287 57.5
A06p15270 Brassica napus HOM05D005557 ORTHO05D006748 1.0e-80 304.3 289 59.2
BraA06t24641Z Brassica rapa HOM05D005557 ORTHO05D006748 1.0e-80 304.3 289 59.2
Atru.chr7.1734 Acer truncatum HOM05D005557 ORTHO05D006748 1.4e-80 303.9 302 59.6
CANSAT56G2230 Cannabis sativa HOM05D005557 ORTHO05D006748 1.4e-80 303.9 288 61.5
Cpa.g.sc28.12 Carica papaya HOM05D005557 ORTHO05D006748 1.8e-80 303.5 291 58.8
FAN01G0749 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.8e-80 303.5 293 57.0
FAN10G4084 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.8e-80 303.5 293 57.0
Aqoxy3G00735 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.3e-80 303.1 295 58.3
CARHR019740 Cardamine hirsuta HOM05D005557 ORTHO05D006748 2.3e-80 303.1 287 57.5
Medtr4g125000 Medicago truncatula HOM05D005557 ORTHO05D006748 2.3e-80 303.1 296 58.1
FAN03G2003 Fragaria x ananassa HOM05D005557 ORTHO05D006748 3.0e-80 302.8 293 57.0
QL11p001232 Quercus lobata HOM05D005557 ORTHO05D006748 3.0e-80 302.8 291 58.8
Glyma.13G111700 Glycine max HOM05D005557 ORTHO05D006748 3.9e-80 302.4 191 74.9
Glyma.17G048000 Glycine max HOM05D005557 ORTHO05D006748 3.9e-80 302.4 191 74.3
Gohir.D06G077200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 3.9e-80 302.4 264 62.5
SGA_v2.0_scaffold31G12665 Striga asiatica HOM05D005557 ORTHO05D006748 3.9e-80 302.4 289 57.8
C05p17510 Brassica napus HOM05D005557 ORTHO05D006748 5.1e-80 302.0 290 57.6
FvH4_7g05500 Fragaria vesca HOM05D005557 ORTHO05D006748 6.7e-80 301.6 293 56.7
A08p29990 Brassica napus HOM05D005557 ORTHO05D006748 8.8e-80 301.2 288 57.3
MSTRG.10500 Avicennia marina HOM05D005557 ORTHO05D006748 1.5e-79 300.4 289 59.2
Gohir.A06G078200 Gossypium hirsutum HOM05D005557 ORTHO05D006748 2.0e-79 300.1 264 61.7
TWI63G1120 Tripterygium wilfordii HOM05D005557 ORTHO05D006748 2.6e-79 299.7 297 57.2
Aa31LG7G3880 Aethionema arabicum HOM05D005557 ORTHO05D006748 3.3e-79 299.3 287 58.2
Cfa002966 Carpinus fangiana HOM05D000173 ORTHO05D006748 3.3e-79 299.3 287 59.9
Gorai.010G090300 Gossypium raimondii HOM05D005557 ORTHO05D006748 5.7e-79 298.5 271 61.3
AT1G19140 Arabidopsis thaliana HOM05D005557 ORTHO05D006748 7.4e-79 298.1 287 59.2
Lalb_Chr07g0181281 Lupinus albus HOM05D005557 ORTHO05D006748 7.4e-79 298.1 291 58.1
MD07G1063400 Malus domestica HOM05D005557 ORTHO05D006748 7.4e-79 298.1 294 56.5
Sed0003389 Sechium edule HOM05D005557 ORTHO05D006748 7.4e-79 298.1 290 57.2
BcaB03g12934 Brassica carinata HOM05D005557 ORTHO05D006748 9.7e-79 297.7 197 72.6
BraA08t34934Z Brassica rapa HOM05D005557 ORTHO05D006748 1.3e-78 297.4 288 57.6
AL1G31720 Arabidopsis lyrata HOM05D005557 ORTHO05D006748 2.2e-78 296.6 288 58.0
MD02G1257100 Malus domestica HOM05D005557 ORTHO05D006748 2.8e-78 296.2 297 56.2
CsaV3_1G041220 Cucumis sativus L. HOM05D005557 ORTHO05D006748 3.7e-78 295.8 296 57.1
VMungo1215G1068 Vigna mungo HOM05D005557 ORTHO05D006748 3.7e-78 295.8 293 55.6
ClCG03G014930 Citrullus lanatus HOM05D005557 ORTHO05D006748 8.2e-78 294.7 294 56.8
HPP92_013279 Vanilla planifolia HOM05D005557 ORTHO05D006748 8.2e-78 294.7 196 71.9
Aqoxy7G00284 Aquilegia oxysepala HOM05D005557 ORTHO05D006748 2.4e-77 293.1 299 56.9
Duzib168G0027 Durio zibethinus HOM05D005557 ORTHO05D006748 3.1e-77 292.7 291 57.4
PGR142G2674 Punica granatum HOM05D005557 ORTHO05D006748 3.1e-77 292.7 292 57.5
Rhsim05G0005000 Rhododendron simsii HOM05D000173 ORTHO05D006748 3.1e-77 292.7 296 57.1
vmacro17121 Vaccinium macrocarpon HOM05D000173 ORTHO05D006748 4.1e-77 292.4 320 54.7
BolC8t49542H Brassica oleracea HOM05D005557 ORTHO05D006748 7.0e-77 291.6 288 57.6
Eucgr.C00788 Eucalyptus grandis HOM05D005557 ORTHO05D006748 9.1e-77 291.2 190 72.6
Phvul.003G129500 Phaseolus vulgaris HOM05D005557 ORTHO05D006748 9.1e-77 291.2 295 54.6
COL.COLO4_18069 Corchorus olitorius HOM05D005557 ORTHO05D006748 1.2e-76 290.8 200 72.5
C08p19230 Brassica napus HOM05D005557 ORTHO05D006748 2.6e-76 289.7 288 57.3
Duzib187G0437 Durio zibethinus HOM05D005557 ORTHO05D006748 3.5e-76 289.3 293 54.9
Lj4g0021187 Lotus japonicus HOM05D005557 ORTHO05D006748 5.9e-76 288.5 294 55.8
PSO386G0114 Papaver somniferum HOM05D005557 ORTHO05D006748 5.9e-76 288.5 312 55.8
TPR.G12564 Trifolium pratense HOM05D005557 ORTHO05D006748 7.7e-76 288.1 297 55.9
Ca_09310_v3 Cicer arietinum L. HOM05D005557 ORTHO05D006748 1.3e-75 287.3 295 55.9
Hund26090 Selenicereus undatus HOM05D005557 ORTHO05D006748 1.7e-75 287.0 390 48.2
Carub.0001s1877 Capsella rubella HOM05D005557 ORTHO05D006748 1.1e-74 284.3 289 56.7
CDE05G0257 Ceratophyllum demersum HOM05D005557 ORTHO05D006748 1.9e-74 283.5 190 70.0
CSS0008332 Camellia sinensis var. sinensis HOM05D005557 ORTHO05D006748 3.2e-74 282.7 303 53.5
Actinidia39641 Actinidia chinensis HOM05D005557 ORTHO05D006748 5.5e-74 282.0 291 56.0
MELO3C015535.2 Cucumis melo HOM05D005557 ORTHO05D006748 9.4e-74 281.2 312 51.9
Os03g0405100 Oryza sativa ssp. japonica HOM05D005557 ORTHO05D006748 9.4e-74 281.2 192 71.4
ECA234G3626 Erigeron canadensis HOM05D005557 ORTHO05D006748 1.6e-73 280.4 243 60.5
SGA_v2.0_scaffold296G47553 Striga asiatica HOM05D005557 ORTHO05D006748 3.6e-73 279.3 303 50.5
FAN10G0153 Fragaria x ananassa HOM05D005557 ORTHO05D006748 1.0e-72 277.7 293 53.9
BcaB03g12932 Brassica carinata HOM05D005557 ORTHO05D006748 3.0e-72 276.2 314 51.6
Lsat_1_v5_gn_5_139800 Lactuca sativa HOM05D005557 ORTHO05D006748 3.0e-72 276.2 292 54.5
HanXRQChr12g0354431 Helianthus annuus HOM05D005557 ORTHO05D006748 5.2e-72 275.4 193 71.0
Zm00001eb019520 Zea mays HOM05D005557 ORTHO05D006748 1.1e-71 274.2 186 72.0
SEGI_32471 Sequoiadendron giganteum HOM05D005557 ORTHO05D006748 4.8e-70 268.9 257 54.5
CANSAT56G3371 Cannabis sativa HOM05D005557 ORTHO05D006748 1.1e-69 267.7 295 56.6
TAR624G0952 Trochodendron aralioides HOM05D005557 ORTHO05D006748 7.0e-69 265.0 272 56.6
unitig_85.g27246 Utricularia gibba HOM05D005557 ORTHO05D006748 1.2e-65 254.2 224 58.5
Psat7g057840 Pisum sativum HOM05D005557 ORTHO05D006748 3.3e-63 246.1 266 56.0
Pp3c26_10620 Physcomitrium patens HOM05D005557 ORTHO05D006748 1.1e-61 241.1 190 57.9
SMO364G0522 Selaginella moellendorffii HOM05D005557 ORTHO05D006748 7.0e-61 238.4 195 59.5
Mapoly0016s0081 Marchantia polymorpha HOM05D005557 ORTHO05D006748 2.7e-60 236.5 190 60.5
ATR1100G017 Amborella trichopoda HOM05D005557 ORTHO05D006748 1.0e-59 234.6 169 70.4
Haze_26037 Corylus avellana HOM05D000173 ORTHO05D000316 1.4e-56 224.2 190 64.2
MBI13_g00696_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 1.5e-50 204.1 176 59.1
Thecc.09G074000 Theobroma cacao HOM05D005557 ORTHO05D006748 1.2e-49 201.1 320 43.8
AUR62025296 Chenopodium quinoa HOM05D005557 ORTHO05D006748 4.9e-46 189.1 109 82.6
AagrBONN_evm.TU.Sc2ySwM_228.5739 Anthoceros agrestis HOM05D005557 ORTHO05D006748 1.3e-43 181.0 160 53.8
CBR_g19881 Chara braunii HOM05D005557 ORTHO05D006748 6.8e-40 168.7 161 54.0
SHI52085 Sapria himalayana HOM05D005557 ORTHO05D006748 3.4e-39 166.4 147 58.5
PSO724G0807 Papaver somniferum HOM05D005557 ORTHO05D006748 1.1e-34 151.4 277 41.9
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 1.5e-34 151.0 92 75.0
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 4.3e-34 149.4 92 75.0
arahy.Tifrunner.gnm1.ann1.D619LQ Arachis hypogaea HOM05D005557 ORTHO05D006748 1.9e-29 134.0 128 57.0
PRCOL_00004586 Prasinoderma coloniale HOM05D005557 ORTHO05D006748 1.9e-29 134.0 201 39.3
arahy.Tifrunner.gnm1.ann1.WCQ4SR Arachis hypogaea HOM05D005557 ORTHO05D006748 3.9e-27 126.3 81 72.8
arahy.Tifrunner.gnm1.ann1.67TMSF Arachis hypogaea HOM05D005557 ORTHO05D006748 5.1e-27 125.9 68 80.9
AagrBONN_evm.TU.Sc2ySwM_228.4614 Anthoceros agrestis HOM05D005557 ORTHO05D006748 6.6e-27 125.6 125 50.4
MCO02G393 Micromonas commoda HOM05D005557 ORTHO05D006748 9.5e-26 121.7 200 35.0
Cre06.g269550 Chlamydomonas reinhardtii HOM05D005557 ORTHO05D006748 1.2e-25 121.3 137 40.9
arahy.Tifrunner.gnm1.ann1.L7J4LP Arachis hypogaea HOM05D005557 ORTHO05D006748 3.1e-16 90.1 57 71.9
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 7.1e-13 79.0 92 47.8
Nn1g06537 Nelumbo nucifera HOM05D005557 ORTHO05D006748 3.5e-12 76.6 117 43.6
Migut.J00920 Erythranthe guttata HOM05D005557 ORTHO05D006748 7.8e-12 75.5 155 38.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 3.1e-08 63.5 31 87.1
C09p50170 Brassica napus HOM05D002376 ORTHO05D004654 5.8e-07 59.3 51 58.8
MBI13_g00695_MAGBIO Magnolia biondii HOM05D005557 ORTHO05D006748 2.2e-06 57.4 116 36.2
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 2.9e-06 57.0 28 85.7
Lj2g0003057 Lotus japonicus HOM05D005557 ORTHO05D018814 8.4e-06 55.5 46 56.5


User provided reference genes

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