Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 1.9e-155 552.4 264 100.0
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 4.4e-83 312.0 208 73.6
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 9.8e-83 310.8 201 73.1
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 9.8e-83 310.8 208 73.6
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 2.3e-79 299.7 214 69.2
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 2.3e-79 299.7 206 70.9
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 6.6e-79 298.1 246 61.0
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 8.6e-79 297.7 206 70.4
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 8.6e-79 297.7 208 71.6
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 1.1e-78 297.4 200 72.0
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 1.2e-77 293.9 208 70.7
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 3.6e-77 292.4 215 65.6
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 6.1e-77 291.6 208 69.2
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 6.1e-77 291.6 208 69.2
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 8.9e-76 287.7 194 73.7
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 2.0e-75 286.6 222 64.9
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 4.4e-75 285.4 201 69.7
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 9.8e-75 284.3 203 69.5
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 1.3e-74 283.9 215 64.2
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 1.7e-74 283.5 212 65.1
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 6.4e-74 281.6 206 68.9
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 8.3e-74 281.2 203 67.0
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 1.8e-73 280.0 208 67.8
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 1.8e-73 280.0 205 65.4
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 2.4e-73 279.6 206 67.0
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 2.4e-73 279.6 215 65.6
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 4.1e-73 278.9 206 66.5
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.2e-72 277.3 199 65.8
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 1.6e-72 276.9 200 69.0
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 2.0e-72 276.6 198 67.2
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 2.7e-72 276.2 202 65.8
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 3.5e-72 275.8 213 63.8
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 4.6e-72 275.4 206 67.0
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 7.8e-72 274.6 206 66.5
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 7.8e-72 274.6 210 66.2
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 3.0e-71 272.7 198 67.2
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 5.0e-71 271.9 218 63.3
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 5.0e-71 271.9 200 66.5
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 5.0e-71 271.9 202 67.8
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.5e-70 270.4 198 66.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.5e-70 270.4 201 65.2
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 1.5e-70 270.4 209 64.1
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 2.5e-70 269.6 204 64.7
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 2.5e-70 269.6 222 61.3
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 2.5e-70 269.6 200 65.0
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 3.3e-70 269.2 197 64.0
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 3.3e-70 269.2 202 65.8
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 4.3e-70 268.9 200 65.0
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 5.6e-70 268.5 200 67.0
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 7.3e-70 268.1 199 67.3
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 7.3e-70 268.1 201 65.2
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 7.3e-70 268.1 202 64.9
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 2.1e-69 266.5 202 64.9
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 2.8e-69 266.2 206 64.6
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 4.7e-69 265.4 201 66.2
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 4.7e-69 265.4 205 64.9
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 6.2e-69 265.0 202 64.4
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 8.0e-69 264.6 220 61.4
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.0e-68 264.2 205 64.9
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.4e-68 263.8 201 65.7
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 1.8e-68 263.5 191 68.6
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 5.2e-68 261.9 186 69.4
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 8.9e-68 261.2 199 66.3
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 1.5e-67 260.4 200 62.5
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 3.4e-67 259.2 199 64.3
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.7e-66 256.9 201 63.7
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 2.9e-66 256.1 201 62.2
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 6.4e-66 255.0 215 59.1
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 1.4e-65 253.8 220 56.8
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 2.4e-65 253.1 198 61.1
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 7.0e-65 251.5 201 61.7
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 1.2e-64 250.8 192 63.5
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 2.7e-64 249.6 135 83.7
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 7.8e-64 248.1 225 58.2
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 3.0e-63 246.1 207 58.0
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 5.0e-63 245.4 200 61.5
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 3.3e-62 242.7 160 75.6
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 3.3e-62 242.7 194 62.4
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 4.0e-60 235.7 224 52.2
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 2.0e-59 233.4 188 59.0
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 3.4e-59 232.6 193 57.5
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 2.2e-58 229.9 183 62.3
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 3.0e-55 219.5 201 55.2
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 1.9e-54 216.9 221 48.9
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 9.5e-54 214.5 192 55.7
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 3.6e-53 212.6 213 51.6
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-52 210.7 159 65.4
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 2.3e-47 193.4 298 42.3
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 3.0e-47 193.0 157 61.1
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 2.5e-46 189.9 146 67.8
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 5.6e-46 188.7 227 47.1
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 7.3e-46 188.3 208 51.4
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 2.1e-45 186.8 137 70.1
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 7.1e-41 171.8 137 65.0
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 6.0e-40 168.7 146 64.4
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.0e-39 167.9 137 63.5
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 1.3e-39 167.5 132 65.2
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 1.3e-39 167.5 138 63.8
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.1e-36 157.9 147 57.8
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.7e-32 143.3 134 57.5
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 4.0e-28 129.4 122 57.4
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 1.2e-27 127.9 187 40.1
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-27 126.3 107 53.3
FAN11G4037 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.1e-23 112.5 70 70.0
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 3.3e-22 109.8 208 35.6
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 4.3e-22 109.4 94 60.6
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 9.6e-22 108.2 94 57.4
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 2.8e-21 106.7 173 36.4
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 2.8e-21 106.7 104 56.7
FAN25G1903 Fragaria x ananassa HOM05D003201 ORTHO05D008805 3.7e-21 106.3 71 67.6
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.8e-20 104.0 100 57.0
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 2.9e-18 96.7 192 35.9
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 3.5e-16 89.7 206 32.0
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 1.3e-15 87.8 176 34.1
Os04g0602700 Oryza sativa ssp. japonica HOM05D007105 ORTHO05D009304 1.9e-09 67.4 202 29.7
BcaC07g37753 Brassica carinata HOM05D007105 ORTHO05D009304 1.0e-07 61.6 234 26.1
BolC8t48138H Brassica oleracea HOM05D007105 ORTHO05D009304 1.0e-07 61.6 234 26.1
AT1G31600 Arabidopsis thaliana HOM05D007105 ORTHO05D009304 2.3e-07 60.5 230 26.5
arahy.Tifrunner.gnm1.ann1.IELT58 Arachis hypogaea HOM05D006806 ORTHO05D008448 8.7e-07 58.5 139 30.9
BcaB04g18148 Brassica carinata HOM05D007105 ORTHO05D009304 8.7e-07 58.5 230 25.7
arahy.Tifrunner.gnm1.ann1.68R93N Arachis hypogaea HOM05D006806 ORTHO05D008448 3.3e-06 56.6 139 30.2


User provided reference genes

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