Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 4.4e-53 211.1 111 100.0
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-48 196.4 111 94.6
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.8e-47 191.8 111 92.8
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-46 189.9 103 96.1
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 9.6e-32 140.2 113 68.1
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 9.6e-32 140.2 90 78.9
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.3e-31 139.8 85 82.4
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.3e-31 139.8 85 82.4
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 2.1e-31 139.0 100 71.0
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 2.8e-31 138.7 85 81.2
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 3.7e-31 138.3 95 76.8
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 3.7e-31 138.3 112 67.9
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 3.7e-31 138.3 85 82.4
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 4.8e-31 137.9 88 80.7
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 4.8e-31 137.9 103 73.8
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 4.8e-31 137.9 111 69.4
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 6.2e-31 137.5 85 80.0
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 6.2e-31 137.5 102 72.5
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 8.1e-31 137.1 86 82.6
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 8.1e-31 137.1 92 77.2
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 1.1e-30 136.7 102 72.5
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.1e-30 136.7 103 69.9
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.1e-30 136.7 101 69.3
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.4e-30 136.3 92 77.2
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 3.1e-30 135.2 85 80.0
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 3.1e-30 135.2 92 77.2
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 4.0e-30 134.8 103 68.9
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 4.0e-30 134.8 102 70.6
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 6.9e-30 134.0 85 78.8
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.2e-29 133.3 97 70.1
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.5e-29 132.9 85 80.0
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.5e-29 132.9 111 64.0
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 2.0e-29 132.5 96 67.7
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.0e-29 132.5 96 67.7
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.0e-29 132.5 94 74.5
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 2.0e-29 132.5 85 78.8
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.0e-29 132.5 82 80.5
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.6e-29 132.1 116 65.5
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 2.6e-29 132.1 83 79.5
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 3.4e-29 131.7 83 81.9
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.4e-29 131.7 85 78.8
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.4e-29 131.7 85 77.6
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 3.4e-29 131.7 85 75.3
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.5e-29 131.3 82 80.5
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.5e-29 131.3 82 80.5
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 4.5e-29 131.3 83 78.3
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 4.5e-29 131.3 83 77.1
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.8e-29 131.0 85 77.6
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 7.6e-29 130.6 85 75.3
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 7.6e-29 130.6 107 65.4
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 7.6e-29 130.6 83 77.1
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 9.9e-29 130.2 100 69.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 9.9e-29 130.2 98 67.3
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 9.9e-29 130.2 83 77.1
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 9.9e-29 130.2 85 76.5
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 1.3e-28 129.8 83 79.5
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.3e-28 129.8 102 70.6
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.3e-28 129.8 83 77.1
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.3e-28 129.8 83 77.1
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.3e-28 129.8 85 77.6
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.3e-28 129.8 83 77.1
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 1.7e-28 129.4 83 75.9
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.7e-28 129.4 100 68.0
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.7e-28 129.4 83 77.1
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.7e-28 129.4 80 82.5
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.7e-28 129.4 83 78.3
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.7e-28 129.4 109 64.2
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.2e-28 129.0 83 75.9
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 2.2e-28 129.0 97 66.0
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 2.9e-28 128.6 83 75.9
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 2.9e-28 128.6 80 82.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 2.9e-28 128.6 114 64.0
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.9e-28 128.6 114 64.0
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.8e-28 128.3 83 75.9
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 3.8e-28 128.3 85 75.3
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.9e-28 127.9 96 70.8
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 4.9e-28 127.9 101 67.3
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 4.9e-28 127.9 82 79.3
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 6.4e-28 127.5 82 78.0
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 8.4e-28 127.1 83 74.7
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 8.4e-28 127.1 83 74.7
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 8.4e-28 127.1 83 74.7
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 8.4e-28 127.1 81 81.5
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 8.4e-28 127.1 99 66.7
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 8.4e-28 127.1 85 75.3
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 8.4e-28 127.1 85 75.3
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 8.4e-28 127.1 85 75.3
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 1.1e-27 126.7 99 67.7
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.4e-27 126.3 114 65.8
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.4e-27 126.3 114 65.8
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.4e-27 126.3 85 74.1
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 1.9e-27 125.9 83 74.7
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.9e-27 125.9 96 72.9
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 2.4e-27 125.6 101 65.3
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 3.2e-27 125.2 80 77.5
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 3.2e-27 125.2 93 68.8
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 4.2e-27 124.8 83 73.5
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 4.2e-27 124.8 83 73.5
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 4.2e-27 124.8 83 73.5
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.2e-27 124.8 83 73.5
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 4.2e-27 124.8 83 73.5
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 5.5e-27 124.4 87 72.4
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 9.3e-27 123.6 85 70.6
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.6e-26 122.9 83 72.3
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.1e-26 122.5 89 66.3
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 2.1e-26 122.5 89 66.3
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 4.6e-26 121.3 87 69.0
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 3.9e-25 118.2 83 71.1
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 5.1e-25 117.9 81 71.6
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.5e-24 116.3 92 63.0
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.5e-24 116.3 100 61.0
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 9.6e-24 113.6 85 68.2
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.8e-23 112.1 82 68.3
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 4.0e-22 108.2 102 57.8
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 1.2e-21 106.7 92 62.0
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.5e-21 106.3 85 68.2
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 3.9e-17 91.7 85 61.2
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 8.7e-17 90.5 61 70.5
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 9.0e-14 80.5 46 84.8
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.0e-12 77.0 80 48.8
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.4e-09 66.6 74 45.9
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 7.4e-08 60.8 52 63.5
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.3e-07 60.1 39 79.5
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 2.2e-07 59.3 42 73.8
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 3.7e-07 58.5 82 34.1
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 4.1e-06 55.1 111 33.3
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 6.9e-06 54.3 62 53.2


User provided reference genes

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