Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 7.2e-112 407.1 190 100.0
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.7e-92 341.7 189 81.5
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 4.9e-92 341.3 189 81.5
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 5.4e-91 337.8 190 83.7
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 2.3e-89 332.4 190 80.0
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 5.0e-89 331.3 180 82.8
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.1e-88 330.1 178 83.1
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.9e-88 329.3 178 81.5
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.9e-88 329.3 178 81.5
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.6e-87 326.2 181 80.7
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.6e-87 326.2 181 80.7
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.6e-87 326.2 178 83.7
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 3.1e-86 322.0 176 80.7
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 3.1e-86 322.0 180 80.0
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 6.8e-86 320.9 202 74.8
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 8.9e-86 320.5 178 80.9
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.2e-85 320.1 195 74.9
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 1.2e-85 320.1 176 81.2
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.0e-85 319.3 186 76.9
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 2.0e-85 319.3 178 80.3
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.0e-85 319.3 178 80.9
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 2.0e-85 319.3 186 77.4
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 2.6e-85 318.9 177 80.2
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 3.4e-85 318.5 175 81.7
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 3.4e-85 318.5 177 80.2
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 4.4e-85 318.2 184 76.6
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 5.8e-85 317.8 179 77.1
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 7.5e-85 317.4 184 76.6
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.3e-84 316.6 176 79.5
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.3e-84 316.6 185 78.4
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.3e-84 316.6 175 80.6
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.2e-84 315.8 174 79.9
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.2e-84 315.8 174 79.9
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.2e-84 315.8 179 78.2
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 3.7e-84 315.1 176 79.0
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 3.7e-84 315.1 185 78.4
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 3.7e-84 315.1 176 79.5
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.7e-84 315.1 175 81.1
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.4e-84 314.3 186 77.4
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 6.4e-84 314.3 176 78.4
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 8.3e-84 313.9 187 74.9
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 8.3e-84 313.9 175 79.4
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 1.1e-83 313.5 181 74.6
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.1e-83 313.5 175 81.1
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.4e-83 313.2 186 76.9
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.9e-83 312.8 176 80.1
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 2.4e-83 312.4 186 76.3
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.4e-83 312.4 177 79.1
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 2.4e-83 312.4 177 79.1
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 2.4e-83 312.4 181 74.6
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 3.2e-83 312.0 183 78.1
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-83 311.6 186 76.9
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-83 311.6 176 80.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 4.1e-83 311.6 179 77.7
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 4.1e-83 311.6 210 67.6
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 5.4e-83 311.2 181 74.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 5.4e-83 311.2 182 76.9
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 7.0e-83 310.8 177 78.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 7.0e-83 310.8 177 78.5
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 7.0e-83 310.8 182 75.3
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.2e-83 310.5 176 79.5
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 2.0e-82 309.3 182 75.8
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.7e-82 308.9 182 74.7
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.5e-82 308.5 176 76.1
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.5e-82 308.5 176 76.1
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.6e-82 308.1 197 72.6
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 6.0e-82 307.8 176 77.3
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 7.8e-82 307.4 177 76.8
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.0e-81 307.0 186 76.3
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.7e-81 306.2 177 78.0
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.7e-81 306.2 185 77.3
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 2.3e-81 305.8 182 75.3
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 3.0e-81 305.4 181 74.0
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 3.9e-81 305.1 182 74.7
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 3.9e-81 305.1 181 72.4
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 5.0e-81 304.7 176 76.7
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 8.6e-81 303.9 175 74.3
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 8.6e-81 303.9 181 72.4
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 8.6e-81 303.9 175 75.4
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.5e-80 303.1 178 75.3
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.9e-80 302.8 182 74.2
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.5e-80 302.4 186 74.2
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 3.3e-80 302.0 169 76.9
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.6e-80 301.2 176 76.7
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.6e-80 301.2 176 76.7
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.6e-79 299.7 179 73.7
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.6e-79 299.7 179 73.7
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.6e-79 299.7 176 75.6
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 4.7e-79 298.1 175 73.7
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.1e-78 295.4 163 77.9
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 7.5e-77 290.8 197 68.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-76 290.0 162 81.5
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.1e-74 282.7 177 70.6
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 6.0e-74 281.2 161 79.5
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 7.8e-74 280.8 163 76.1
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 7.8e-74 280.8 201 66.2
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 1.3e-73 280.0 180 68.9
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.0e-73 278.9 218 61.5
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.9e-73 278.5 218 61.0
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 6.6e-73 277.7 178 69.7
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.6e-73 277.7 177 71.2
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.6e-73 277.7 177 71.2
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 2.5e-72 275.8 147 80.3
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 3.4e-69 265.4 182 63.2
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.9e-68 262.3 164 73.2
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 3.7e-68 261.9 157 72.6
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.9e-68 261.5 149 76.5
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 8.4e-68 260.8 147 77.6
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.4e-67 260.0 147 78.2
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 3.2e-67 258.8 149 77.2
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 6.0e-66 254.6 176 68.2
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.3e-65 253.4 267 49.4
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.7e-65 253.1 201 59.2
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 3.0e-65 252.3 176 68.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 3.9e-65 251.9 144 74.3
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 4.3e-64 248.4 138 79.7
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 1.2e-63 246.9 184 62.0
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.6e-63 245.4 154 71.4
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 7.6e-61 237.7 186 60.8
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.3e-57 226.9 143 67.1
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 8.7e-57 224.2 174 54.6
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.3e-56 221.1 118 83.9
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 4.8e-55 218.4 164 60.4
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 4.4e-53 211.8 210 52.9
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 2.2e-52 209.5 187 58.8
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.4e-51 206.1 185 56.2
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-48 196.8 173 47.4
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-48 196.8 173 47.4
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 4.3e-48 195.3 193 47.7
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 5.8e-45 184.9 91 87.9
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.4e-43 179.5 121 64.5
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 7.9e-42 174.5 192 51.6
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-41 173.3 141 61.0
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-40 170.6 88 85.2
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 4.3e-40 168.7 182 42.3
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 5.6e-40 168.3 163 49.1
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.3e-39 167.2 213 38.0
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 6.2e-39 164.9 181 42.0
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 2.5e-35 152.9 142 47.9
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.5e-35 151.8 147 54.4
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.7e-34 149.4 92 68.5
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.7e-28 130.2 95 60.0
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 2.0e-08 63.5 41 61.0
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 3.3e-08 62.8 47 61.7
Actinidia38479 Actinidia chinensis HOM05D002335 ORTHO05D006692 5.3e-06 55.5 32 78.1
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 9.1e-06 54.7 37 62.2


User provided reference genes

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