Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 3.7e-151 538.1 262 100.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 7.9e-101 370.9 257 66.5
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.3e-98 363.6 258 64.3
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.3e-98 363.6 257 65.0
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.2e-98 362.8 259 64.5
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 4.8e-98 361.7 257 63.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 6.3e-98 361.3 257 65.0
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 5.9e-96 354.8 257 63.0
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 5.9e-96 354.8 259 63.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.0e-95 354.0 261 64.0
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 8.5e-95 350.9 260 63.1
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 3.2e-94 349.0 259 61.8
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 4.2e-94 348.6 257 62.6
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 7.2e-94 347.8 255 62.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.6e-93 346.7 262 62.2
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.0e-92 344.0 235 65.1
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.4e-92 343.6 257 60.7
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.8e-92 343.2 258 61.2
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 6.7e-92 341.3 257 60.7
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 6.7e-92 341.3 260 62.3
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 6.7e-92 341.3 258 61.6
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.7e-92 341.3 258 62.8
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 8.8e-92 340.9 260 61.9
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 2.0e-91 339.7 256 59.8
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.5e-91 339.3 257 60.7
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 3.3e-91 339.0 262 61.1
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 4.3e-91 338.6 257 61.5
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.4e-91 337.8 258 61.6
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 7.4e-91 337.8 257 60.7
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.7e-91 337.4 237 64.1
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.3e-90 337.0 258 60.9
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.7e-90 336.7 258 61.6
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 4.8e-90 335.1 258 61.6
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 6.3e-90 334.7 257 60.3
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 6.3e-90 334.7 297 54.9
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.2e-90 334.3 259 60.6
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 8.2e-90 334.3 258 61.2
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 8.2e-90 334.3 258 61.2
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.1e-89 334.0 258 60.1
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.1e-89 334.0 258 62.0
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.4e-89 333.6 259 62.2
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.1e-89 332.4 237 62.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 6.9e-89 331.3 258 61.6
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 6.9e-89 331.3 258 61.2
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 6.9e-89 331.3 258 61.2
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.0e-88 329.7 280 56.4
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.6e-88 329.3 259 59.5
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.6e-88 329.3 258 60.5
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.4e-88 328.9 260 58.5
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.3e-87 327.0 261 60.2
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.2e-87 326.2 260 57.7
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.2e-87 326.2 260 57.7
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.2e-87 326.2 260 59.2
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.9e-87 325.9 258 58.9
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.9e-87 325.9 257 60.7
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 3.8e-87 325.5 259 59.5
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.5e-87 324.3 207 67.6
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.5e-87 324.3 207 67.6
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.4e-86 323.6 219 66.2
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.5e-86 322.8 259 59.5
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 4.2e-86 322.0 260 57.7
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 7.2e-86 321.2 221 65.6
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 7.2e-86 321.2 261 60.9
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 9.4e-86 320.9 239 61.9
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 2.7e-85 319.3 259 57.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.9e-85 317.8 254 57.5
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.0e-84 317.4 251 58.2
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.4e-84 317.0 271 55.4
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.3e-84 316.2 262 58.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.3e-84 316.2 259 57.9
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 6.7e-84 314.7 281 54.4
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.1e-83 313.9 258 58.1
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.1e-83 313.9 262 57.3
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.3e-83 312.4 238 61.8
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 4.4e-83 312.0 263 60.5
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 7.4e-83 311.2 290 53.1
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 2.8e-82 309.3 258 57.4
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 6.3e-82 308.1 261 58.2
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 8.2e-82 307.8 260 55.0
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 8.2e-82 307.8 216 65.3
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.2e-82 307.8 241 60.6
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.8e-81 306.6 217 64.1
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.8e-81 306.6 238 60.5
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.3e-79 300.4 325 47.4
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.7e-79 300.1 284 51.1
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.9e-79 299.3 235 57.9
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 3.8e-79 298.9 260 56.9
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.1e-78 297.4 219 62.6
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.1e-78 297.4 200 65.5
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-78 296.6 300 50.3
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.2e-77 293.9 233 61.8
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.1e-75 287.3 224 54.9
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 9.7e-75 284.3 259 54.1
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.8e-74 282.0 272 50.4
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 5.3e-73 278.5 265 51.7
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 9.1e-73 277.7 259 52.9
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.5e-72 275.4 235 54.9
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 5.0e-71 271.9 263 51.3
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 5.5e-70 268.5 226 56.2
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 5.2e-68 261.9 226 54.0
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.4e-65 253.1 183 61.7
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 7.0e-65 251.5 181 63.5
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 9.1e-65 251.1 303 43.9
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.5e-62 243.8 263 50.2
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 6.8e-60 235.0 185 60.0
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-59 234.2 226 53.1
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 9.8e-59 231.1 223 50.2
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.8e-58 229.6 182 57.7
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 1.0e-55 221.1 217 47.9
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 5.0e-55 218.8 170 61.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.1e-54 217.6 228 45.2
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.2e-54 214.9 194 51.5
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.8e-52 210.3 191 53.9
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 2.3e-52 209.9 170 61.2
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 4.0e-52 209.1 172 56.4
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.0e-52 209.1 224 47.8
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 7.5e-51 204.9 217 48.8
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 9.2e-49 198.0 191 50.3
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.0e-47 194.5 208 47.1
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.3e-47 194.1 141 59.6
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.1e-46 191.0 149 60.4
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 7.3e-46 188.3 165 56.4
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.0e-44 184.5 141 58.9
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.3e-44 183.3 151 57.6
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.2e-43 181.0 145 57.2
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.0e-39 166.4 224 40.2
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.9e-38 163.7 220 43.6
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 5.6e-38 162.2 113 65.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.6e-37 160.6 126 61.1
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-36 157.9 132 57.6
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 1.4e-33 147.5 112 58.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 4.1e-33 146.0 356 30.1
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.2e-32 144.4 93 68.8
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.8e-32 141.7 93 67.7
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.0e-31 141.4 93 67.7
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.0e-31 139.8 93 65.6
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 1.1e-30 137.9 260 34.6
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 4.0e-28 129.4 221 35.3
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 2.6e-27 126.7 149 46.3
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.4e-27 126.3 238 35.3
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.3e-26 124.4 97 54.6
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 1.1e-22 111.3 96 56.2
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.7e-21 105.9 67 61.2
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-20 104.8 67 61.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.1e-20 103.2 67 59.7
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 8.9e-20 101.7 77 54.5
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.6e-19 100.1 63 63.5
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 7.6e-19 98.6 76 56.6
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.4e-18 95.1 72 61.1
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 3.2e-17 93.2 69 60.9
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.4e-17 92.4 81 56.8
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 4.3e-14 82.8 90 48.9
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.8e-13 79.3 59 55.9
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-12 77.0 83 49.4
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 6.9e-12 75.5 77 51.9
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 7.6e-11 72.0 82 45.1
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.3e-10 71.2 48 60.4
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.4e-09 67.8 53 58.5
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.6e-08 64.3 56 51.8
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 4.6e-08 62.8 74 45.9
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 9.6e-06 55.1 141 26.2


User provided reference genes

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