Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.0e-116 420.6 212 100.0
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 3.4e-86 322.0 213 77.9
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 5.8e-86 321.2 212 75.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.8e-86 321.2 213 77.5
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.6e-86 320.9 217 76.5
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 4.9e-85 318.2 212 75.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.4e-85 317.8 212 75.0
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 5.4e-84 314.7 217 75.1
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.2e-83 313.5 214 75.2
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 4.6e-83 311.6 213 74.6
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 4.6e-83 311.6 212 75.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.0e-82 308.9 210 73.8
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 3.0e-82 308.9 216 74.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.9e-82 308.5 215 74.9
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 3.9e-82 308.5 212 74.1
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 8.7e-82 307.4 212 72.6
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.7e-82 307.4 215 74.4
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.9e-81 306.2 212 74.1
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.5e-81 305.8 217 73.7
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 3.3e-81 305.4 212 73.6
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.3e-81 305.4 218 73.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.3e-81 305.1 212 74.5
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.3e-81 305.1 221 71.9
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 5.6e-81 304.7 217 73.3
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 5.6e-81 304.7 216 72.7
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 5.6e-81 304.7 221 70.6
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 9.6e-81 303.9 212 73.6
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.3e-80 303.5 217 72.8
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.6e-80 303.1 214 72.4
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.6e-80 303.1 217 72.4
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.6e-80 303.1 215 73.0
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 2.8e-80 302.4 214 72.9
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.8e-80 302.4 212 72.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.8e-80 302.4 222 70.7
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 4.8e-80 301.6 216 71.8
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.2e-80 301.2 212 72.2
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 8.1e-80 300.8 216 71.8
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 8.1e-80 300.8 220 70.0
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.8e-79 299.7 213 74.2
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.8e-79 299.7 212 73.6
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-79 299.3 218 70.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 2.4e-79 299.3 216 70.8
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 4.0e-79 298.5 212 71.2
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 4.0e-79 298.5 216 71.8
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.2e-78 297.0 222 68.9
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.2e-78 297.0 216 71.8
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.5e-78 296.6 224 68.3
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.0e-78 296.2 220 69.5
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.6e-78 295.8 212 72.2
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.4e-78 295.4 223 68.6
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.4e-78 295.4 223 68.6
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 4.5e-78 295.0 212 71.7
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 5.8e-78 294.7 214 70.1
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 5.8e-78 294.7 212 71.7
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 7.6e-78 294.3 223 68.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 9.9e-78 293.9 216 69.0
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.2e-77 292.7 210 71.0
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.9e-77 292.4 222 68.0
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.9e-77 292.4 221 70.6
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.9e-77 291.6 217 69.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 6.4e-77 291.2 217 69.6
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 8.4e-77 290.8 220 66.8
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.1e-76 290.4 219 68.5
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.4e-76 290.0 226 66.4
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.9e-76 289.7 223 68.2
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.2e-76 288.9 219 69.4
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.2e-76 288.5 221 66.5
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 4.2e-76 288.5 171 81.9
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 4.2e-76 288.5 217 67.7
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.2e-76 288.5 222 65.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.2e-76 288.5 224 66.1
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 5.4e-76 288.1 216 69.4
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.4e-76 288.1 226 65.0
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 7.1e-76 287.7 222 67.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 7.1e-76 287.7 222 66.7
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 7.1e-76 287.7 215 69.3
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 9.3e-76 287.3 220 67.3
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 9.3e-76 287.3 220 67.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 9.3e-76 287.3 217 69.6
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-75 287.0 224 66.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.2e-75 287.0 220 67.7
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-75 286.6 218 68.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.6e-75 286.6 224 66.5
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-75 286.2 217 68.2
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-75 286.2 217 68.2
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.1e-75 286.2 215 67.0
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.7e-75 285.8 193 76.2
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.7e-75 285.8 217 66.8
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.7e-75 285.8 227 65.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 4.6e-75 285.0 217 67.7
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 6.0e-75 284.6 217 66.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 6.0e-75 284.6 261 60.5
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.3e-74 283.5 214 68.2
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 3.0e-74 282.3 220 66.4
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 3.9e-74 282.0 221 67.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 8.7e-74 280.8 220 65.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 8.7e-74 280.8 217 68.7
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.5e-73 280.0 186 75.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-73 279.6 218 67.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-73 279.6 220 65.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.9e-73 279.6 218 67.0
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.9e-73 279.6 220 65.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.5e-73 279.3 211 68.2
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.3e-73 278.9 225 65.8
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 4.3e-73 278.5 179 77.7
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 5.6e-73 278.1 220 65.5
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 7.4e-73 277.7 214 69.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 7.4e-73 277.7 217 67.7
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 9.6e-73 277.3 217 67.3
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.6e-72 276.6 215 66.5
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.8e-72 275.8 225 65.3
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 3.7e-72 275.4 219 66.2
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 8.1e-72 274.2 215 67.4
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.4e-71 272.7 219 63.0
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.1e-71 272.3 179 75.4
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.2e-70 270.4 223 63.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.5e-70 270.0 222 64.4
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.5e-70 270.0 223 63.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 3.4e-70 268.9 219 65.8
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.8e-70 268.1 221 63.3
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.3e-69 266.9 179 74.3
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.9e-69 265.8 216 63.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.5e-69 264.6 190 69.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.4e-68 263.5 234 60.7
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.1e-68 261.2 246 58.5
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.1e-67 259.6 215 64.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 2.1e-67 259.6 221 63.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 4.6e-67 258.5 203 66.0
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.6e-67 258.5 224 62.9
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 6.7e-66 254.6 212 62.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 8.7e-66 254.2 202 67.8
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 7.4e-65 251.1 181 69.6
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.3e-64 250.4 220 57.3
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.6e-64 250.0 207 61.8
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 6.2e-64 248.1 219 57.5
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.0e-63 244.2 202 59.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.0e-61 238.4 207 57.5
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 4.2e-60 235.3 256 53.5
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 9.3e-60 234.2 179 67.6
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 4.6e-59 231.9 195 60.0
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.5e-57 226.1 223 54.3
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.4e-55 220.3 224 54.5
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.6e-54 216.1 212 55.2
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.2e-51 207.2 153 68.0
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.9e-47 191.4 143 72.7
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.6e-43 180.3 139 68.3
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.1e-41 174.1 171 55.0
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 6.3e-40 168.3 99 87.9
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.0e-39 164.9 97 80.4
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.0e-39 164.9 113 77.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.5e-38 162.2 98 85.7
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 1.0e-37 161.0 188 54.3
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.2e-29 133.3 102 70.6
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 5.0e-29 132.1 147 53.1
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 7.2e-28 128.3 71 74.6
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.7e-27 126.3 70 80.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.1e-23 114.4 213 39.9
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.8e-23 113.6 93 67.7
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 2.9e-21 106.3 66 81.8
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 3.8e-21 105.9 215 35.8
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 9.4e-20 101.3 71 74.6
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.2e-19 100.9 178 39.3
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.4e-18 97.4 145 46.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.0e-18 96.3 144 45.8
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.1e-15 87.8 70 58.6
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.4e-15 87.4 72 56.9
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.2e-14 84.3 56 66.1
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.0e-14 83.6 160 36.2
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.8e-11 73.2 51 72.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.6e-11 72.8 53 71.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-09 67.4 62 53.2
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.2e-07 59.7 71 50.7
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.5e-06 56.2 57 56.1


User provided reference genes

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