Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.3e-91 339.0 185 100.0
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.8e-28 129.4 201 41.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.8e-28 128.6 200 40.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.8e-27 126.7 209 41.1
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.0e-27 124.8 201 40.3
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-26 124.0 200 39.5
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-25 120.6 113 53.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.9e-25 119.4 192 40.6
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.9e-25 119.4 198 39.4
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 5.0e-25 118.6 207 40.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.1e-24 117.5 200 39.0
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.9e-24 116.7 202 41.6
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 9.4e-24 114.4 197 36.5
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.1e-23 113.2 199 40.2
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.1e-23 113.2 199 40.2
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.1e-23 113.2 199 40.2
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.1e-23 113.2 207 39.6
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.0e-22 110.9 205 39.0
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.0e-22 110.9 200 36.0
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.8e-22 110.2 121 48.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 4.0e-22 109.0 199 38.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.3e-20 104.0 109 49.5
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.7e-20 103.6 191 39.3
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.2e-20 103.2 191 39.3
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.2e-20 103.2 204 36.8
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.8e-20 102.8 198 35.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.8e-20 102.8 207 37.2
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.4e-19 100.5 191 36.1
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 3.1e-19 99.4 204 33.3
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.1e-19 99.4 201 34.3
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 9.1e-19 97.8 199 41.7
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 9.1e-19 97.8 199 42.2
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 9.1e-19 97.8 199 35.7
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.2e-18 97.4 98 52.0
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.6e-18 97.1 191 39.3
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.5e-18 95.5 196 35.2
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 5.9e-18 95.1 196 34.7
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 7.7e-18 94.7 197 37.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.0e-17 94.4 208 32.7
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.3e-17 94.0 198 35.4
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.7e-17 93.6 191 33.5
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.2e-17 93.2 188 37.8
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 6.5e-17 91.7 207 34.3
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.5e-16 90.5 178 38.2
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.5e-16 90.5 194 35.1
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.2e-16 89.0 199 34.2
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 9.4e-16 87.8 193 33.7
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.6e-15 87.0 118 38.1
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.1e-15 86.7 189 34.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.1e-15 86.7 115 47.0
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.7e-15 85.5 199 31.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.4e-14 84.0 193 33.2
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.8e-14 83.6 108 42.6
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.3e-14 83.2 120 43.3
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 5.2e-14 82.0 177 34.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 6.8e-14 81.6 121 42.1
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 1.2e-13 80.9 108 43.5
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.2e-13 80.9 108 43.5
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.5e-13 80.5 122 40.2
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.5e-13 80.5 122 40.2
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.5e-13 80.5 116 43.1
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 2.0e-13 80.1 118 40.7
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 3.4e-13 79.3 110 40.0
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 9.8e-13 77.8 200 34.0
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.3e-12 77.4 118 41.5
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 2.2e-12 76.6 120 39.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 3.7e-12 75.9 197 29.9
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.1e-11 74.3 201 32.3
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.1e-11 74.3 202 28.2
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.1e-11 72.4 126 33.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.2e-10 70.9 196 29.1
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-10 70.9 208 32.2
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 2.0e-10 70.1 206 30.1
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.7e-10 69.7 115 37.4
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.7e-10 69.7 202 27.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.5e-10 69.3 195 32.3
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.5e-10 69.3 203 31.5
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 4.5e-10 68.9 184 29.3
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.9e-10 68.6 115 36.5
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.0e-09 67.8 213 29.1
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.0e-09 67.8 127 37.0
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.3e-09 66.6 75 46.7
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.0e-09 65.5 200 31.0
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 8.6e-09 64.7 195 29.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.1e-08 64.3 98 37.8
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.1e-08 64.3 98 37.8
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.5e-08 63.9 114 37.7
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.2e-08 62.4 119 37.0
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 7.2e-08 61.6 118 33.1
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 9.5e-08 61.2 65 44.6
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 9.5e-08 61.2 105 38.1
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.2e-07 60.8 111 35.1
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.6e-07 60.5 178 31.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 2.1e-07 60.1 74 44.6
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.8e-07 59.7 65 44.6
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.8e-07 59.7 119 35.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.8e-07 59.7 119 37.8
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.6e-07 59.3 118 33.9
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 4.7e-07 58.9 65 47.7
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 4.7e-07 58.9 118 33.9
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 6.1e-07 58.5 93 32.3
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 8.0e-07 58.2 119 36.1
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 8.0e-07 58.2 89 39.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 8.0e-07 58.2 195 26.2
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.8e-06 57.0 107 35.5
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.3e-06 56.6 131 35.9
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.0e-06 56.2 121 28.9
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.0e-06 55.8 76 36.8
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.2e-06 55.5 114 32.5
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 5.2e-06 55.5 90 35.6
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 5.2e-06 55.5 117 37.6
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 5.2e-06 55.5 68 44.1
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 6.8e-06 55.1 103 37.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 8.8e-06 54.7 152 30.3
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 8.8e-06 54.7 65 46.2


User provided reference genes

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