Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.1e-162 574.3 283 100.0
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 3.3e-76 289.3 285 51.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 5.6e-76 288.5 277 53.4
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.5e-68 263.1 270 52.2
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.5e-68 263.1 270 52.2
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 8.1e-67 258.1 281 48.0
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.1e-66 257.7 277 49.8
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.4e-66 257.3 281 50.5
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.4e-65 252.7 281 44.5
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 4.4e-65 252.3 279 47.7
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.3e-64 250.8 273 46.9
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.2e-64 250.0 266 46.2
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.9e-63 246.9 272 44.5
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 4.1e-63 245.7 267 49.1
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.1e-63 245.7 278 44.6
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 9.2e-63 244.6 262 48.1
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.1e-62 243.4 281 46.6
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.1e-62 243.4 279 48.0
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.5e-62 242.7 272 44.9
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 6.0e-62 241.9 278 43.9
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.0e-61 241.1 258 46.9
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.7e-61 240.4 282 44.3
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.3e-61 240.0 271 44.6
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.1e-60 237.7 282 44.0
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 2.5e-60 236.5 264 48.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 5.6e-60 235.3 264 45.1
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 5.6e-60 235.3 284 41.9
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 2.8e-59 233.0 275 42.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.1e-58 231.1 262 48.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.4e-58 230.7 270 41.5
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.4e-58 229.9 273 43.6
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 3.1e-58 229.6 271 46.1
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 3.1e-58 229.6 271 45.0
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 8.9e-58 228.0 271 46.1
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.2e-57 227.6 248 46.0
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.5e-57 227.3 257 45.9
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.0e-57 226.9 257 45.9
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 4.4e-57 225.7 250 46.4
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 9.9e-57 224.6 251 45.8
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.3e-56 224.2 264 41.7
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.2e-56 223.4 278 44.6
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.9e-56 223.0 245 46.9
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 6.4e-56 221.9 264 41.3
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.4e-55 220.7 285 42.1
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.9e-55 220.3 248 45.2
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.4e-55 219.9 249 45.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 3.2e-55 219.5 254 43.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.1e-55 219.2 240 46.7
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 2.1e-54 216.9 270 42.6
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.1e-54 216.9 270 44.4
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.5e-54 216.1 248 44.4
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 7.8e-54 214.9 266 46.6
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.7e-53 213.8 265 46.8
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.6e-53 211.8 248 43.5
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 8.7e-53 211.5 247 42.9
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.1e-52 211.1 236 45.3
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.9e-52 210.3 261 40.6
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 3.3e-52 209.5 250 45.2
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 3.3e-52 209.5 283 41.7
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.3e-52 209.1 263 41.1
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 9.6e-52 208.0 250 42.4
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.6e-51 207.2 278 41.4
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 3.6e-51 206.1 266 39.8
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 4.7e-51 205.7 282 40.1
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.5e-49 200.7 253 40.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.5e-44 184.1 256 37.5
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.9e-44 183.7 254 36.2
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.1e-42 177.9 258 41.5
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 6.9e-42 175.3 261 35.6
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 6.9e-42 175.3 260 38.5
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-41 174.5 248 38.7
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.5e-41 174.1 258 38.0
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.5e-41 174.1 258 38.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.0e-41 173.7 252 38.1
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.6e-41 173.3 258 38.4
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.5e-41 172.6 257 37.0
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.3e-40 171.0 266 38.0
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.7e-40 170.6 252 37.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.7e-40 170.6 267 36.7
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 8.4e-40 168.3 259 36.3
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.9e-39 167.2 259 34.7
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.9e-39 167.2 275 36.0
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.4e-39 165.6 253 36.4
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 7.1e-39 165.2 259 35.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.6e-38 164.1 220 38.2
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.7e-38 163.3 245 34.7
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.7e-38 163.3 255 38.0
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.6e-38 162.5 252 36.5
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.3e-37 160.2 264 34.5
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.3e-37 160.2 267 36.0
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.0e-37 159.8 258 33.3
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.9e-37 159.5 266 34.6
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.9e-37 159.5 252 36.5
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.1e-37 159.1 252 36.9
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.5e-36 157.5 261 37.5
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.5e-36 157.5 266 35.0
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 3.3e-36 156.4 270 37.4
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.3e-36 156.0 265 36.6
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-35 154.5 243 35.0
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.1e-35 153.7 248 37.1
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.7e-35 152.9 283 32.9
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.8e-35 152.5 152 48.7
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 6.2e-35 152.1 251 35.5
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 8.1e-35 151.8 250 35.6
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.1e-34 151.4 256 35.5
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.4e-34 151.0 263 34.2
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.4e-34 150.2 262 36.3
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 9.0e-34 148.3 296 31.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 9.0e-34 148.3 253 34.0
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.0e-33 147.1 289 32.2
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 2.0e-33 147.1 246 35.8
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 3.4e-33 146.4 223 37.2
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.2e-32 143.7 270 32.2
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.8e-32 142.9 260 33.5
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.9e-32 142.5 264 34.5
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 6.4e-32 142.1 250 34.4
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 6.4e-32 142.1 263 30.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-31 141.4 273 31.1
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-31 141.4 266 32.7
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-31 141.4 266 32.7
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.1e-31 141.4 261 32.2
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.9e-31 140.6 265 31.3
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.4e-31 140.2 265 31.3
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.4e-31 140.2 237 33.8
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.2e-31 139.4 271 32.5
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 5.5e-31 139.0 232 34.1
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 5.5e-31 139.0 263 29.7
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 7.1e-31 138.7 263 33.1
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.1e-30 137.1 267 33.0
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 7.9e-30 135.2 252 32.5
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.3e-29 134.4 261 34.5
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 3.9e-29 132.9 264 32.6
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 5.1e-29 132.5 264 33.3
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.7e-29 132.1 263 33.5
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 6.7e-29 132.1 267 33.0
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.1e-28 131.3 243 36.6
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.5e-28 131.0 265 32.8
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.9e-28 130.6 262 32.8
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 4.3e-28 129.4 282 32.6
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 5.6e-28 129.0 265 32.8
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 7.4e-28 128.6 287 31.0
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 9.6e-28 128.3 243 35.8
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.3e-27 127.9 262 30.5
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.8e-26 124.0 258 33.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.4e-26 123.6 263 31.6
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 4.0e-26 122.9 267 31.8
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 9.0e-26 121.7 261 29.9
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.0e-25 120.6 223 30.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.8e-25 119.0 249 36.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.4e-23 114.4 186 35.5
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.5e-23 113.6 154 37.0
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 7.9e-22 108.6 154 36.4
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.0e-16 91.7 215 27.4
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.5e-15 87.0 118 39.0
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 2.5e-07 60.5 89 32.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.2e-07 60.1 107 34.6
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 6.1e-06 55.8 76 35.5


User provided reference genes

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