Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.2e-146 522.3 274 100.0
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 1.6e-99 366.7 265 70.2
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.6e-99 366.7 259 72.2
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 9.5e-97 357.5 253 68.4
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.0e-95 354.0 269 67.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 6.8e-95 351.3 257 68.9
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 6.8e-95 351.3 262 66.8
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.4e-94 348.6 257 67.3
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 5.7e-94 348.2 266 65.0
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 7.5e-94 347.8 252 72.6
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.3e-93 347.1 259 68.7
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.7e-93 346.7 267 68.2
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.2e-93 346.3 267 67.8
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 2.2e-93 346.3 267 67.8
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.8e-93 345.9 256 69.9
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.8e-93 345.9 256 69.9
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.3e-93 344.4 256 69.9
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 8.3e-93 344.4 258 70.2
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.1e-92 344.0 256 68.4
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 1.1e-92 344.0 256 67.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.4e-92 343.6 260 68.5
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-92 343.2 256 69.9
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-92 343.2 256 69.9
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 2.4e-92 342.8 253 67.2
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 7.0e-92 341.3 262 67.2
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.6e-91 340.1 261 67.4
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.6e-91 340.1 257 66.9
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 7.8e-91 337.8 250 69.6
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.7e-90 336.7 249 69.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 2.9e-90 335.9 259 66.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 3.8e-90 335.5 222 72.5
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 8.6e-90 334.3 258 67.4
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.5e-89 333.6 263 66.9
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.5e-89 333.6 267 64.4
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.5e-89 333.6 259 64.1
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 2.5e-89 332.8 261 63.2
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.3e-89 332.4 258 67.8
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 3.3e-89 332.4 260 67.7
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 3.3e-89 332.4 257 66.9
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 5.6e-89 331.6 257 64.2
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.2e-88 330.5 262 64.5
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.2e-88 330.5 266 66.9
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.6e-88 330.1 259 67.6
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 2.1e-88 329.7 249 66.3
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 2.8e-88 329.3 253 67.2
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.8e-88 329.3 260 63.5
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 4.7e-88 328.6 259 66.8
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.4e-87 327.0 256 66.4
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.4e-87 327.0 256 66.4
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 2.3e-87 326.2 256 66.4
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 2.3e-87 326.2 257 65.4
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 3.0e-87 325.9 260 60.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 6.8e-87 324.7 219 69.9
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 5.7e-86 321.6 263 63.5
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 7.5e-86 321.2 256 65.6
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 2.9e-85 319.3 266 62.4
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 3.7e-85 318.9 262 63.0
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 3.7e-85 318.9 262 63.0
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.2e-84 315.8 264 63.6
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 4.1e-84 315.5 264 62.1
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 7.0e-84 314.7 261 65.5
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.2e-83 313.9 266 63.5
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.6e-83 313.5 267 64.4
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 1.6e-83 313.5 258 62.8
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 5.9e-83 311.6 267 64.0
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 5.9e-83 311.6 267 64.0
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 7.8e-83 311.2 271 59.0
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.3e-82 310.5 258 63.6
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.3e-82 310.5 262 61.1
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.7e-82 310.1 272 60.7
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 1.7e-82 310.1 262 64.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.7e-82 310.1 268 60.4
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.3e-82 309.7 267 64.0
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.3e-82 309.7 267 64.0
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 3.0e-82 309.3 267 64.0
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.0e-82 309.3 265 60.8
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.9e-82 308.9 260 63.1
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 5.0e-82 308.5 267 63.7
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 6.6e-82 308.1 267 63.7
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 1.5e-81 307.0 255 60.4
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.9e-81 306.6 265 64.9
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 3.3e-81 305.8 249 65.9
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 5.6e-81 305.1 244 64.8
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 3.6e-80 302.4 256 63.3
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 4.7e-80 302.0 267 62.2
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 6.2e-80 301.6 261 62.1
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 6.2e-80 301.6 252 66.3
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 8.0e-80 301.2 258 63.6
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.1e-79 300.8 263 57.8
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 6.8e-79 298.1 256 60.5
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.5e-78 297.0 264 57.2
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.0e-78 296.6 263 58.2
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 2.6e-78 296.2 256 62.1
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 4.4e-78 295.4 260 61.2
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 4.4e-78 295.4 266 62.4
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.9e-77 292.7 259 57.5
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 2.9e-77 292.7 238 65.1
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.1e-76 290.8 261 55.6
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.9e-76 290.0 249 63.9
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.9e-76 290.0 193 70.5
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.9e-76 290.0 268 60.4
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 5.4e-76 288.5 263 58.6
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.2e-75 287.3 264 59.5
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.6e-75 287.0 265 58.9
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 1.6e-75 287.0 268 59.7
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 4.6e-75 285.4 259 61.0
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 6.0e-75 285.0 260 60.8
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 6.0e-75 285.0 263 59.7
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 7.8e-75 284.6 251 62.2
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.7e-74 283.5 253 62.1
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 3.3e-73 279.3 233 57.1
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 9.5e-73 277.7 247 61.9
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 6.2e-72 275.0 179 73.7
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 6.2e-72 275.0 312 52.2
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.2e-70 270.8 268 57.5
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 2.0e-70 270.0 264 58.7
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.3e-69 267.3 207 65.2
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.9e-68 263.5 257 54.9
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 3.2e-60 236.1 230 53.0
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 5.4e-60 235.3 215 52.6
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 6.0e-59 231.9 229 53.7
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.5e-57 227.3 187 65.2
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 3.4e-54 216.1 184 60.3
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.2e-52 209.5 203 51.2
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 6.0e-51 205.3 215 49.3
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 8.7e-42 174.9 117 71.8
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 3.3e-41 172.9 215 42.8
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.6e-32 144.1 147 52.4
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 3.1e-31 139.8 99 68.7
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.5e-30 137.5 261 37.9
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.4e-30 136.3 159 47.2
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 3.9e-26 122.9 229 30.6
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 2.2e-24 117.1 201 33.8
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 4.1e-23 112.8 199 33.7
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 7.6e-22 108.6 68 72.1
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.0e-21 105.9 66 68.2
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 2.2e-16 90.5 64 68.8
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.8e-16 89.4 91 57.1
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.8e-16 89.4 91 57.1
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-15 88.2 62 69.4
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 6.9e-15 85.5 119 48.7
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.1e-15 85.1 50 76.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 6.1e-11 72.4 68 64.7
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.4e-10 71.2 62 58.1
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.8e-10 70.9 50 66.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.0e-10 70.1 45 64.4
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 6.7e-10 68.9 45 64.4
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 8.8e-10 68.6 43 74.4
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 7.4e-09 65.5 39 74.4
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 7.7e-06 55.5 72 55.6


User provided reference genes

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