Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.7e-117 426.0 212 100.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.5e-97 359.8 205 83.4
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.6e-96 356.3 205 82.9
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.1e-96 355.9 206 82.0
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 3.6e-96 355.1 205 81.0
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.1e-95 353.6 205 79.5
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 3.1e-95 352.1 205 80.0
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 5.2e-95 351.3 205 82.4
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 6.8e-95 350.9 205 82.4
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 8.9e-95 350.5 205 80.5
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.5e-94 349.7 205 80.0
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 2.6e-94 349.0 205 81.0
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 4.4e-94 348.2 205 80.5
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 4.4e-94 348.2 205 80.5
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 4.4e-94 348.2 207 80.2
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 5.8e-94 347.8 205 79.0
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 5.8e-94 347.8 207 79.7
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.3e-93 346.7 205 79.0
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.3e-93 346.7 211 78.2
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.7e-93 346.3 205 80.0
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.7e-93 346.3 205 79.5
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 2.9e-93 345.5 205 80.0
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 3.8e-93 345.1 205 80.5
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 3.8e-93 345.1 205 80.0
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 4.9e-93 344.7 205 80.0
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 8.4e-93 344.0 205 81.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 8.4e-93 344.0 205 79.5
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.4e-92 343.2 205 79.5
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 1.4e-92 343.2 207 78.3
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.9e-92 342.8 205 76.6
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.4e-92 342.4 205 77.1
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 2.4e-92 342.4 205 77.6
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 4.2e-92 341.7 208 76.0
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 5.4e-92 341.3 205 78.0
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 9.3e-92 340.5 211 75.8
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 9.3e-92 340.5 205 77.6
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 9.3e-92 340.5 206 78.6
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.2e-91 340.1 205 77.6
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 1.2e-91 340.1 207 78.3
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 2.7e-91 339.0 205 77.1
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 2.7e-91 339.0 208 77.9
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.7e-91 339.0 205 77.1
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 3.5e-91 338.6 205 77.1
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 7.8e-91 337.4 207 77.3
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.3e-90 336.7 205 76.1
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.3e-90 336.7 208 76.4
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-90 336.3 205 77.1
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 2.3e-90 335.9 205 75.6
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 2.3e-90 335.9 210 78.1
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 3.0e-90 335.5 205 76.1
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 3.9e-90 335.1 205 76.6
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 3.9e-90 335.1 205 76.6
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.9e-90 335.1 205 75.6
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 5.1e-90 334.7 205 75.1
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 5.1e-90 334.7 205 76.6
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 5.1e-90 334.7 205 75.6
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 5.1e-90 334.7 210 74.3
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 6.6e-90 334.3 205 76.6
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 8.7e-90 334.0 205 78.5
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 75.6
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.5e-89 333.2 205 75.1
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.5e-89 333.2 205 75.6
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.5e-89 333.2 203 76.8
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.3e-89 332.0 208 75.0
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 4.3e-89 331.6 205 75.6
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 4.3e-89 331.6 205 75.1
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 5.6e-89 331.3 208 75.0
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 7.3e-89 330.9 205 74.6
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 7.3e-89 330.9 212 73.6
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 9.6e-89 330.5 208 74.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 9.6e-89 330.5 210 73.8
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 1.6e-88 329.7 205 75.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.6e-88 329.7 208 74.5
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 3.6e-88 328.6 205 74.6
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.6e-88 328.6 210 72.4
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 4.8e-88 328.2 205 75.1
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 1.1e-87 327.0 186 84.4
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.1e-87 327.0 210 72.4
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 2.4e-87 325.9 210 74.3
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 4.0e-87 325.1 205 74.1
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.3e-87 324.7 206 76.2
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.0e-86 322.8 208 75.0
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.1e-84 317.0 229 65.9
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.4e-84 316.6 215 70.2
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 1.9e-84 316.2 210 70.0
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 3.2e-84 315.5 205 72.7
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.2e-83 313.5 210 67.1
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 3.9e-82 308.5 205 73.2
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 5.6e-81 304.7 212 67.0
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 7.3e-81 304.3 214 71.0
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 2.4e-79 299.3 205 72.2
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 5.3e-79 298.1 205 72.7
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.6e-78 295.8 203 66.5
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 2.9e-77 292.4 178 77.0
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 1.4e-76 290.0 205 68.8
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.4e-76 290.0 207 65.7
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 6.0e-75 284.6 207 63.8
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 7.9e-75 284.3 203 63.1
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.3e-74 283.5 203 64.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 8.7e-74 280.8 203 63.5
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.3e-73 278.9 166 77.7
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.8e-71 273.1 166 77.1
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 8.4e-69 264.2 172 70.3
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.1e-68 263.8 186 69.9
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 7.9e-67 257.7 159 79.2
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 2.3e-66 256.1 163 75.5
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.5e-65 253.4 249 53.8
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 7.4e-65 251.1 157 76.4
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.3e-58 230.3 194 58.8
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 1.5e-54 216.9 218 49.1
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.7e-51 206.1 182 54.9
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 7.9e-51 204.5 133 69.2
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.4e-47 193.7 208 47.1
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.8e-47 193.4 142 67.6
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 3.4e-46 189.1 153 60.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 6.1e-43 178.3 130 63.1
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 6.1e-43 178.3 130 63.1
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 2.0e-41 173.3 210 47.1
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 3.5e-38 162.5 95 81.1
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 5.5e-36 155.2 223 40.4
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 5.5e-36 155.2 223 40.4
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.4e-23 113.2 201 36.3
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 5.9e-22 108.6 96 58.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 4.2e-20 102.4 65 67.7
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.3e-18 96.7 53 86.8
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.3e-18 96.7 52 88.5
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 4.0e-18 95.9 86 55.8
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.4e-15 87.4 53 77.4
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.8e-15 87.0 73 61.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 1.6e-14 84.0 57 64.9
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 3.5e-14 82.8 65 63.1
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 1.6e-11 73.9 55 67.3
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 4.0e-10 69.3 134 38.8
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 8.9e-10 68.2 50 62.0
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.6e-09 66.6 39 79.5
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 3.7e-08 62.8 33 87.9
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.8e-07 60.5 43 72.1
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 3.5e-06 56.2 53 49.1
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 3.5e-06 56.2 36 61.1


User provided reference genes

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