Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.4e-148 530.8 605 100.0
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 4.5e-59 233.4 247 76.5
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.2e-54 218.8 248 72.2
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.6e-54 217.6 248 71.8
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 7.0e-52 209.5 228 73.2
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.1e-47 195.7 248 68.1
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 7.3e-41 172.9 226 71.7
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 7.3e-41 172.9 226 71.7
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.1e-39 169.1 251 62.2
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.3e-39 167.9 247 63.6
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-38 164.5 211 68.7
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 5.8e-38 163.3 212 67.5
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.9e-37 161.0 234 67.1
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 4.1e-36 157.1 191 76.4
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 3.5e-35 154.1 213 40.8
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 2.3e-34 151.4 230 66.5
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 3.9e-34 150.6 233 65.2
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 1.1e-33 149.1 211 46.0
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 2.5e-33 147.9 213 63.8
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 4.3e-33 147.1 212 64.2
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 5.6e-33 146.7 213 39.4
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 5.6e-33 146.7 212 45.8
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.6e-32 145.2 234 62.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.6e-32 144.1 212 39.2
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 4.7e-32 143.7 228 62.7
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 1.1e-31 142.5 190 42.6
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 5.2e-31 140.2 230 65.2
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 5.2e-31 140.2 230 63.0
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 6.8e-31 139.8 229 61.6
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 8.9e-31 139.4 213 62.4
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 8.9e-31 139.4 226 64.6
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 8.9e-31 139.4 204 69.6
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 1.2e-30 139.0 213 62.4
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 1.2e-30 139.0 213 62.4
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 1.2e-30 139.0 213 62.4
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 2.0e-30 138.3 221 60.6
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 3.4e-30 137.5 213 62.0
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.4e-30 137.1 231 64.1
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 4.4e-30 137.1 211 36.5
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 5.8e-30 136.7 224 64.7
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 5.8e-30 136.7 227 60.4
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.8e-30 136.7 194 71.6
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 9.9e-30 136.0 195 70.8
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 1.3e-29 135.6 223 61.0
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.7e-29 135.2 195 70.8
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 2.9e-29 134.4 209 62.7
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 3.8e-29 134.0 235 59.1
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 4.9e-29 133.7 213 64.3
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.4e-29 133.3 225 60.0
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 6.4e-29 133.3 187 73.8
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 8.4e-29 132.9 209 62.2
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 8.4e-29 132.9 234 59.8
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 8.4e-29 132.9 178 77.0
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.1e-28 132.5 226 60.6
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.1e-28 132.5 193 71.0
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 1.1e-28 132.5 211 64.9
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.4e-28 132.1 231 59.3
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.4e-28 132.1 190 67.9
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.9e-28 131.7 188 69.1
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 1.9e-28 131.7 188 69.7
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 2.4e-28 131.3 211 38.9
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.4e-28 131.3 231 63.2
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.4e-28 131.3 192 67.7
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 2.4e-28 131.3 188 69.7
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 2.4e-28 131.3 228 62.7
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 2.4e-28 131.3 188 70.2
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 3.2e-28 131.0 198 68.2
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 3.2e-28 131.0 185 73.5
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 5.4e-28 130.2 186 73.1
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 7.1e-28 129.8 225 62.2
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 9.2e-28 129.4 209 61.7
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 9.2e-28 129.4 219 58.9
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 9.2e-28 129.4 231 63.2
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 1.2e-27 129.0 219 59.4
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 1.2e-27 129.0 219 59.4
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 1.6e-27 128.6 203 67.5
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.6e-27 128.6 203 67.5
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 1.6e-27 128.6 193 70.5
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 2.7e-27 127.9 221 58.8
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 2.7e-27 127.9 221 58.8
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 2.7e-27 127.9 230 63.9
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 2.7e-27 127.9 223 61.9
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 3.5e-27 127.5 209 60.8
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 3.5e-27 127.5 193 69.9
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 3.5e-27 127.5 66 92.4
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.5e-27 127.5 195 70.8
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.5e-27 127.5 195 70.8
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 4.6e-27 127.1 186 72.0
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.6e-27 127.1 235 57.9
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 6.0e-27 126.7 193 38.9
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 6.0e-27 126.7 187 68.4
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 6.0e-27 126.7 206 66.0
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 7.8e-27 126.3 225 61.8
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-26 125.6 203 66.5
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 1.3e-26 125.6 188 66.5
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 2.3e-26 124.8 203 64.0
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 3.0e-26 124.4 198 68.7
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 3.9e-26 124.0 235 60.0
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 3.9e-26 124.0 195 64.1
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 5.1e-26 123.6 231 58.9
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.5e-25 121.3 222 58.6
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 3.3e-25 120.9 185 37.3
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.6e-25 120.2 222 56.8
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 9.6e-25 119.4 231 57.1
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.2e-24 119.0 233 60.9
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.6e-24 118.6 185 69.2
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 2.1e-24 118.2 230 57.0
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 2.1e-24 118.2 212 38.7
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 3.6e-24 117.5 206 57.8
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 3.6e-24 117.5 231 61.5
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 3.6e-24 117.5 231 61.5
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 3.6e-24 117.5 231 39.8
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 2.4e-23 114.8 229 57.2
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 9.0e-23 112.8 202 56.9
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 3.4e-22 110.9 231 61.5
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 4.4e-22 110.5 199 64.8
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.4e-22 110.5 199 61.8
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 4.4e-22 110.5 230 60.4
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 5.8e-22 110.2 165 66.7
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 9.9e-22 109.4 221 33.9
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-21 109.0 172 72.1
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.7e-21 108.6 224 54.9
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.7e-21 108.6 195 62.1
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.7e-21 108.6 195 62.1
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 2.9e-21 107.8 197 61.4
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 3.8e-21 107.5 231 58.4
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 4.9e-21 107.1 229 55.9
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.4e-20 105.5 214 54.7
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.9e-20 105.1 229 40.2
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 5.4e-20 103.6 203 55.7
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 7.1e-20 103.2 70 71.4
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 7.1e-20 103.2 166 69.3
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 2.7e-19 101.3 186 65.6
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 3.5e-19 100.9 187 33.7
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 1.0e-18 99.4 230 59.6
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.3e-18 99.0 203 55.2
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 3.0e-18 97.8 157 39.5
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 3.0e-18 97.8 112 50.9
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 5.1e-18 97.1 85 57.6
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 8.7e-18 96.3 179 62.6
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 1.1e-17 95.9 167 71.3
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.1e-17 95.9 209 57.9
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 1.9e-17 95.1 186 57.5
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.9e-17 95.1 186 57.5
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 2.5e-17 94.7 75 60.0
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 4.3e-17 94.0 222 56.8
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 5.6e-17 93.6 186 58.1
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 7.3e-17 93.2 203 59.1
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 1.6e-16 92.0 69 63.8
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 2.1e-16 91.7 186 39.2
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 2.8e-16 91.3 82 54.9
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 4.8e-16 90.5 227 34.4
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 4.8e-16 90.5 188 64.4
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 6.2e-16 90.1 238 51.7
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 8.1e-16 89.7 106 50.9
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 1.1e-15 89.4 63 68.3
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 1.1e-15 89.4 189 65.6
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 1.1e-15 89.4 69 59.4
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.4e-15 89.0 57 73.7
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 2.4e-15 88.2 58 70.7
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 3.1e-15 87.8 186 42.5
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 4.0e-15 87.4 107 45.8
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 4.0e-15 87.4 185 60.5
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 4.0e-15 87.4 75 60.0
ECA234G0433 Erigeron canadensis HOM05D003689 ORTHO05D003950 5.3e-15 87.0 63 61.9
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 5.3e-15 87.0 67 62.7
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 9.0e-15 86.3 186 43.0
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.2e-14 85.9 55 72.7
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 1.2e-14 85.9 78 53.8
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 2.6e-14 84.7 167 64.7
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 4.5e-14 84.0 196 56.1
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 7.6e-14 83.2 185 55.1
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.3e-13 82.4 68 55.9
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 2.9e-13 81.3 77 50.6
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 2.1e-11 75.1 98 45.9
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 6.0e-11 73.6 81 43.2
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 2.1e-08 65.1 68 44.1
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 2.8e-08 64.7 71 40.8
MD02G1045000 Malus domestica HOM05D003689 ORTHO05D003950 3.7e-08 64.3 40 72.5
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.1e-07 62.8 144 35.4
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.1e-07 62.8 100 40.0
COL.COLO4_18698 Corchorus olitorius HOM05D003689 ORTHO05D003950 3.1e-07 61.2 42 64.3
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 4.0e-07 60.8 41 68.3
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 1.5e-06 58.9 208 25.0
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 4.5e-06 57.4 45 57.8


User provided reference genes

Program Settings