Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 2.5e-98 362.1 175 100.0
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 3.8e-91 338.2 175 92.6
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 1.6e-89 332.8 175 92.0
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 1.3e-88 329.7 171 90.6
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.8e-88 329.3 172 90.1
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 3.9e-88 328.2 175 88.6
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 5.1e-88 327.8 175 90.3
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 8.7e-88 327.0 175 88.6
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.5e-87 326.2 172 88.4
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 2.5e-87 325.5 172 89.0
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.5e-87 325.5 172 89.5
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 3.3e-87 325.1 172 88.4
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 88.4
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 86.3
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 89.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 7.4e-87 323.9 173 88.4
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 87.8
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 1.3e-86 323.2 172 87.8
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.3e-86 323.2 172 87.8
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 1.3e-86 323.2 172 88.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.3e-86 323.2 172 87.2
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.6e-86 322.8 172 87.8
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.2e-86 322.4 175 86.3
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 87.8
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 87.2
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 88.4
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 87.8
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 89.0
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 87.8
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 4.8e-86 321.2 171 88.3
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 87.2
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 88.4
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 88.4
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 86.6
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 8.2e-86 320.5 171 86.5
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 1.4e-85 319.7 172 87.2
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.4e-85 319.7 172 86.6
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.8e-85 319.3 175 84.6
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 88.4
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.8e-85 319.3 175 86.3
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 2.4e-85 318.9 175 85.7
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 87.2
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.4e-85 318.9 171 87.7
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 87.8
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.1e-85 318.5 172 87.2
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 87.2
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 87.2
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 84.6
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 1.5e-84 316.2 174 85.1
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 2.0e-84 315.8 175 84.0
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 2.0e-84 315.8 175 84.0
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 2.0e-84 315.8 174 86.2
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 2.0e-84 315.8 172 86.6
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 85.5
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.6e-84 315.5 175 85.7
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 87.2
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 84.0
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 84.0
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.4e-84 315.1 174 84.5
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 4.5e-84 314.7 172 86.6
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 82.9
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 4.5e-84 314.7 174 84.5
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 7.7e-84 313.9 175 83.4
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 84.9
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 86.0
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.7e-83 312.8 172 86.0
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.7e-83 312.8 174 83.9
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.7e-83 312.8 174 83.9
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 3.8e-83 311.6 174 83.3
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.8e-83 311.6 171 86.5
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 84.9
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 8.5e-83 310.5 172 84.3
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.1e-82 310.1 173 85.0
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 85.5
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 85.5
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.4e-82 309.7 172 84.3
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-82 309.7 174 82.8
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.2e-82 308.5 174 82.2
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 4.2e-82 308.1 172 86.0
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 5.5e-82 307.8 171 84.2
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 84.9
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 9.4e-82 307.0 172 83.7
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.6e-81 305.1 187 78.6
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 4.6e-81 304.7 172 83.7
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.6e-81 304.7 176 81.8
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.8e-80 302.8 171 84.8
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.3e-80 302.4 172 83.1
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 5.1e-80 301.2 223 68.6
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 6.7e-80 300.8 172 83.1
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 1.5e-79 299.7 178 81.5
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.0e-79 299.3 175 80.6
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 2.5e-79 298.9 174 81.0
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 2.5e-79 298.9 174 81.0
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 2.5e-79 298.9 174 81.0
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 2.5e-79 298.9 174 81.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.8e-78 295.4 159 87.4
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 2.8e-78 295.4 169 81.1
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 3.7e-78 295.0 174 80.5
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.4e-76 288.5 158 87.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 4.8e-70 268.1 151 85.4
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.8e-69 266.2 172 70.9
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.6e-68 262.3 146 87.0
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 4.5e-68 261.5 171 74.3
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 2.2e-67 259.2 174 69.5
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.1e-65 252.7 172 65.1
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.0e-64 250.4 172 65.1
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.6e-63 245.7 134 88.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 5.7e-63 244.6 130 90.8
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 5.7e-63 244.6 130 90.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 4.8e-62 241.5 145 80.0
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 4.1e-61 238.4 134 86.6
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 4.5e-60 235.0 136 84.6
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 5.9e-60 234.6 126 88.9
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 2.9e-59 232.3 127 85.8
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 5.0e-59 231.5 127 85.8
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 6.5e-59 231.1 173 67.1
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.9e-58 229.6 128 85.9
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 7.2e-58 227.6 135 82.2
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 1.2e-57 226.9 130 83.1
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.7e-57 225.7 177 63.8
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 2.0e-55 219.5 127 80.3
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 3.7e-54 215.3 129 79.8
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-53 213.8 163 68.1
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 4.2e-50 201.8 132 74.2
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.2e-49 200.3 126 79.4
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.2e-47 193.7 128 74.2
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.8e-45 186.4 130 70.0
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 9.5e-42 174.1 131 69.5
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.0e-37 157.9 91 84.6
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.0e-36 156.4 96 79.2
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.3e-35 153.7 80 86.2
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.3e-35 153.7 90 84.4
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.1e-34 150.6 93 76.3
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.5e-34 147.5 95 78.9
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.1e-33 146.4 104 71.2
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.8e-33 146.0 91 80.2
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.0e-32 144.1 89 82.0
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.0e-32 144.1 88 78.4
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-32 143.7 96 74.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.4e-29 132.9 99 64.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 5.4e-29 131.7 80 77.5
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 7.8e-28 127.9 75 82.7
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 9.5e-26 120.9 109 54.1
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.1e-25 119.8 77 77.9
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 4.7e-25 118.6 192 34.9
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 9.8e-23 110.9 90 63.3
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 1.1e-18 97.4 57 78.9
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 8.4e-14 81.3 38 86.8


User provided reference genes

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