Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 6.0e-135 484.2 247 100.0
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 5.8e-130 467.6 247 94.7
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 2.5e-128 462.2 247 94.3
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 5.5e-128 461.1 247 93.5
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 9.3e-128 460.3 246 93.5
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 9.3e-128 460.3 247 93.5
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 9.3e-128 460.3 247 93.5
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.2e-127 459.9 247 93.5
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.1e-127 459.1 247 93.5
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.1e-127 459.1 247 93.5
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 4.6e-127 458.0 247 93.1
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 1.0e-126 456.8 245 93.9
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.0e-126 456.8 247 93.1
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.3e-126 456.4 247 93.5
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 3.0e-126 455.3 247 93.5
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 5.1e-126 454.5 245 91.4
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 1.1e-125 453.4 246 92.3
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.1e-125 453.4 247 92.7
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.1e-125 453.4 247 91.1
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.5e-125 453.0 246 92.3
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 1.5e-125 453.0 247 92.3
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 1.9e-125 452.6 247 91.9
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.5e-125 452.2 247 91.9
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 2.5e-125 452.2 247 92.3
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 92.3
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 4.3e-125 451.4 247 91.1
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 91.1
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 5.7e-125 451.1 247 91.9
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 9.7e-125 450.3 247 91.9
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 9.7e-125 450.3 243 92.6
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.6e-124 449.5 247 91.5
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 1.6e-124 449.5 248 92.7
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.2e-124 449.1 245 91.8
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.8e-124 448.7 247 91.9
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 2.8e-124 448.7 245 92.7
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.7e-124 448.4 247 91.1
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.7e-124 448.4 247 91.9
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.7e-124 448.4 247 91.9
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 4.8e-124 448.0 248 91.9
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 4.8e-124 448.0 248 91.9
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 4.8e-124 448.0 246 91.1
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 6.3e-124 447.6 247 90.7
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 6.3e-124 447.6 246 91.5
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 91.5
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 91.1
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 8.2e-124 447.2 247 91.5
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 89.9
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 1.1e-123 446.8 247 89.9
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 1.4e-123 446.4 245 91.4
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 91.5
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 1.8e-123 446.0 243 92.2
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.8e-123 446.0 247 89.9
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.8e-123 446.0 248 91.5
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 89.9
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 89.5
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 2.4e-123 445.7 247 91.1
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 2.4e-123 445.7 244 92.2
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 4.1e-123 444.9 247 91.1
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 4.1e-123 444.9 247 90.3
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 4.1e-123 444.9 247 90.7
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 5.3e-123 444.5 248 90.7
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.9
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.2e-122 443.4 247 89.9
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.5e-122 443.0 247 89.5
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.5e-122 443.0 248 90.3
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.5e-122 443.0 248 90.3
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.9
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.9
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.9
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.9
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 2.0e-122 442.6 247 89.5
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 2.0e-122 442.6 243 90.5
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 2.6e-122 442.2 252 89.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.5
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 3.4e-122 441.8 247 89.5
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.4e-122 441.8 245 89.8
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 3.4e-122 441.8 245 89.4
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 3.4e-122 441.8 243 90.5
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 5.9e-122 441.0 247 89.1
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 89.5
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 88.7
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 7.7e-122 440.7 247 89.5
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 7.7e-122 440.7 244 90.2
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 1.0e-121 440.3 248 89.9
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 88.3
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.3e-121 439.9 247 88.7
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 1.7e-121 439.5 245 89.8
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 1.7e-121 439.5 247 88.7
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.7e-121 439.5 245 90.2
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 88.7
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 2.9e-121 438.7 247 88.7
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 88.7
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 88.7
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.1
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 88.7
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 89.1
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 3.8e-121 438.3 247 88.7
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 3.8e-121 438.3 269 84.4
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 88.7
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 5.0e-121 438.0 245 89.4
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 89.5
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 5.0e-121 438.0 247 88.7
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 6.5e-121 437.6 247 89.1
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 8.5e-121 437.2 247 88.7
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 8.5e-121 437.2 247 88.7
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 1.1e-120 436.8 247 88.7
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.4e-120 436.4 248 88.3
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.4e-120 436.4 235 92.8
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.5e-120 435.6 247 88.3
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 5.5e-120 434.5 247 87.9
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 5.5e-120 434.5 247 87.9
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.7e-119 432.2 248 89.9
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 3.6e-119 431.8 247 88.7
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 4.6e-119 431.4 248 88.3
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.0e-118 430.3 248 87.5
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.0e-118 430.3 247 87.0
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 3.0e-118 428.7 248 86.7
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 3.3e-117 425.2 306 74.2
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 4.3e-117 424.9 290 77.6
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 1.7e-116 422.9 286 78.0
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 2.2e-116 422.5 248 85.5
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 2.8e-116 422.2 248 86.3
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 6.3e-116 421.0 246 86.6
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 1.1e-115 420.2 260 83.5
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.8e-115 419.5 246 86.2
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 5.3e-115 417.9 250 84.4
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 1.2e-114 416.8 247 87.0
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 9.4e-112 407.1 250 81.6
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 7.9e-111 404.1 334 65.9
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 4.4e-109 398.3 380 58.9
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 1.3e-108 396.7 251 78.9
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.8e-108 395.6 245 80.0
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.4e-107 392.5 252 77.4
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.5e-106 389.8 266 78.2
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 2.0e-106 389.4 251 76.5
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 2.6e-106 389.0 252 76.2
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 2.6e-106 389.0 211 91.0
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 2.6e-106 389.0 211 91.0
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 1.6e-103 379.8 213 89.7
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.5e-101 373.2 359 59.6
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.7e-92 343.2 245 73.5
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 1.3e-89 333.6 198 88.9
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.2e-88 328.9 247 72.9
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 4.0e-86 322.0 245 70.6
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 2.4e-83 312.8 172 93.0
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 3.1e-83 312.4 172 93.0
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 1.2e-82 310.5 179 87.7
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 2.1e-79 299.7 165 89.7
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 4.7e-79 298.5 169 87.0
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 6.6e-73 278.1 280 56.4
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 4.4e-61 238.8 241 49.8
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 3.5e-58 229.2 138 81.9
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.9e-49 199.1 247 51.4
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 2.5e-48 196.4 232 44.0
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 1.2e-45 187.6 253 43.5
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 1.1e-43 181.0 102 88.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.9e-40 170.2 97 85.6
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 3.6e-39 166.0 208 53.4
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 8.4e-36 154.8 165 55.2
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 1.6e-31 140.6 141 56.7
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 2.9e-28 129.8 82 76.8
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 8.4e-28 128.3 84 75.0
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 5.1e-25 119.0 82 76.8
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.1e-25 119.0 83 74.7
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 4.3e-24 115.9 232 34.9
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 9.6e-24 114.8 212 41.0
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 1.1e-19 101.3 99 49.5
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 6.0e-18 95.5 57 86.0
Hund21152 Selenicereus undatus HOM05D003856 ORTHO05D004547 8.7e-17 91.7 47 89.4
Migut.L00276 Erythranthe guttata HOM05D003856 ORTHO05D004547 2.5e-16 90.1 51 84.3
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 3.7e-15 86.3 51 84.3
vmacro04321 Vaccinium macrocarpon HOM05D004428 ORTHO05D013648 1.4e-14 84.3 74 63.5
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 2.4e-14 83.6 52 86.5
Dinv13969 Davidia involucrata HOM05D003856 ORTHO05D004547 1.7e-12 77.4 79 57.0
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 9.3e-11 71.6 38 86.8
vmacro16921 Vaccinium macrocarpon HOM05D000007 ORTHO05D013648 1.8e-09 67.4 106 47.2
Rhsim07G0218800 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.3e-09 67.0 90 50.0
FAN07G2353 Fragaria x ananassa HOM05D003856 ORTHO05D004547 5.1e-09 65.9 44 81.8
A05p11440 Brassica napus HOM05D003856 ORTHO05D004547 4.8e-07 59.3 36 75.0
C04p14930 Brassica napus HOM05D003856 ORTHO05D004547 4.8e-07 59.3 36 75.0
BraA05t20093Z Brassica rapa HOM05D003856 ORTHO05D004547 4.8e-07 59.3 36 75.0
Rhsim07G0218900 Rhododendron simsii HOM05D003856 ORTHO05D013648 2.4e-06 57.0 98 43.9
vmacro22601 Vaccinium macrocarpon HOM05D003856 ORTHO05D426869 3.1e-06 56.6 87 46.0


User provided reference genes

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