Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 7.8e-185 650.2 303 100.0
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 7.3e-167 590.5 300 89.0
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 3.8e-163 578.2 301 88.4
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 1.9e-162 575.9 300 87.3
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 1.6e-161 572.8 300 85.7
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.6e-161 572.8 299 87.0
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 3.9e-160 568.2 300 85.7
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 6.7e-160 567.4 300 84.0
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 8.7e-160 567.0 300 86.3
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 8.7e-160 567.0 300 85.3
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.9e-159 565.8 303 83.5
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 3.3e-159 565.1 303 83.8
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 3.3e-159 565.1 300 83.3
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 4.3e-159 564.7 300 85.7
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 7.4e-159 563.9 300 84.7
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.6e-158 562.8 300 85.0
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 2.1e-158 562.4 303 84.2
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.1e-158 562.4 300 84.0
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 2.1e-158 562.4 300 85.7
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.8e-158 562.0 301 84.1
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 4.8e-158 561.2 300 84.7
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 6.2e-158 560.8 300 84.0
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 8.1e-158 560.5 300 82.3
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 1.4e-157 559.7 300 82.0
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 2.4e-157 558.9 300 84.3
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 2.4e-157 558.9 303 84.5
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.1e-157 558.5 300 83.7
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 4.0e-157 558.1 299 84.9
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 5.3e-157 557.8 300 84.0
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 6.9e-157 557.4 300 82.0
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 6.9e-157 557.4 300 83.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 9.0e-157 557.0 299 83.6
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.2e-156 556.6 300 81.7
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.2e-156 556.6 300 83.0
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 1.5e-156 556.2 300 82.0
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.0e-156 555.8 300 84.7
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.6e-156 555.4 300 84.3
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 4.5e-156 554.7 299 82.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 4.5e-156 554.7 299 83.9
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.5e-156 554.7 299 84.3
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 4.5e-156 554.7 299 84.3
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 4.5e-156 554.7 299 84.3
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.8e-156 554.3 300 83.3
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 5.8e-156 554.3 300 83.7
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 5.8e-156 554.3 300 84.3
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 5.8e-156 554.3 300 82.7
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 5.8e-156 554.3 300 82.3
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 7.6e-156 553.9 300 82.0
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 9.9e-156 553.5 295 85.1
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 9.9e-156 553.5 300 82.0
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 1.3e-155 553.1 299 83.9
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.7e-155 552.7 301 82.4
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 2.9e-155 552.0 300 82.7
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.8e-155 551.6 300 83.7
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 3.8e-155 551.6 314 80.3
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 4.9e-155 551.2 299 83.6
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.9e-155 551.2 299 83.3
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 6.4e-155 550.8 314 80.3
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 6.4e-155 550.8 300 82.3
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 1.1e-154 550.1 344 75.0
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.4e-154 548.9 300 82.7
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 4.2e-154 548.1 300 83.0
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 3.5e-153 545.0 300 80.3
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.3e-152 543.1 299 82.3
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.3e-152 542.3 299 82.3
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.0e-152 542.0 299 81.9
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 5.1e-152 541.2 300 81.0
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 1.1e-151 540.0 299 80.6
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.5e-151 539.7 301 79.4
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 1.5e-151 539.7 300 81.0
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 2.5e-151 538.9 333 75.7
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 3.3e-151 538.5 301 79.7
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 7.4e-151 537.3 282 86.9
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.4e-151 537.3 300 80.7
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 9.6e-151 537.0 300 81.0
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 1.3e-150 536.6 301 79.1
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.3e-150 536.6 300 80.3
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 1.3e-150 536.6 300 79.7
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 4.8e-150 534.6 300 80.0
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 4.8e-150 534.6 301 78.7
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 6.2e-150 534.3 303 78.5
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 8.1e-150 533.9 302 80.8
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 8.1e-150 533.9 279 87.5
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 1.1e-149 533.5 297 81.1
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 6.9e-149 530.8 301 79.1
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 6.9e-149 530.8 301 78.7
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 6.9e-149 530.8 301 78.7
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 1.2e-148 530.0 301 77.1
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 1.5e-148 529.6 301 77.7
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 2.0e-148 529.3 301 79.7
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 3.4e-148 528.5 301 78.7
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 3.4e-148 528.5 301 77.4
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 7.6e-148 527.3 286 81.8
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.2e-147 525.8 294 80.3
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.8e-147 525.0 286 81.5
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 4.9e-147 524.6 301 78.1
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 8.4e-147 523.9 285 81.8
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 8.4e-147 523.9 285 81.8
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 2.5e-146 522.3 301 79.1
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 3.2e-146 521.9 301 78.7
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 7.1e-146 520.8 302 78.5
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 1.6e-145 519.6 299 80.6
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 2.3e-144 515.8 326 74.5
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.5e-143 513.1 279 83.9
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.3e-143 511.9 300 75.7
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 7.4e-143 510.8 262 90.1
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 2.1e-142 509.2 300 75.7
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 1.1e-141 506.9 300 73.7
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 9.0e-141 503.8 300 72.3
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 2.6e-140 502.3 286 81.8
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 3.0e-136 488.8 311 74.0
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.4e-133 479.9 283 80.2
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 7.2e-122 441.0 319 69.6
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 4.7e-121 438.3 301 69.4
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 3.1e-117 425.6 300 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 4.5e-116 421.8 302 65.2
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 5.0e-115 418.3 249 77.1
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 3.2e-114 415.6 302 64.2
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 2.6e-111 406.0 240 73.3
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 6.5e-107 391.3 305 58.0
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 8.0e-97 357.8 242 67.4
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 1.0e-96 357.5 332 52.1
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 3.0e-96 355.9 349 51.6
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 4.4e-95 352.1 186 84.4
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 6.6e-91 338.2 311 55.0
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 3.4e-79 299.3 346 49.1
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 9.5e-74 281.2 346 47.7
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.5e-50 203.4 115 78.3
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.4e-32 143.7 115 60.0
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 9.3e-29 131.7 102 60.8
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.8e-19 100.9 55 81.8
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 2.5e-18 97.1 138 42.8
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 2.6e-07 60.5 36 72.2
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.9e-06 57.0 121 32.2


User provided reference genes

Program Settings