Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 4.7e-132 474.9 314 100.0
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.9e-49 199.9 334 56.9
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 3.8e-49 199.5 346 54.6
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 3.8e-49 199.5 330 52.1
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-48 197.6 337 48.4
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.9e-48 197.2 352 49.1
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 3.2e-48 196.4 336 46.1
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.1e-48 195.3 353 43.9
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.2e-47 194.5 370 54.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.2e-47 194.5 320 48.1
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-47 194.5 349 51.6
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 2.7e-47 193.4 313 55.0
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 3.5e-47 193.0 352 45.7
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.5e-47 193.0 326 50.3
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.3e-46 191.0 295 54.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.8e-46 190.7 345 49.3
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.8e-46 190.7 338 45.6
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 3.0e-46 189.9 356 55.9
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 3.9e-46 189.5 331 50.8
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.1e-46 189.1 342 50.9
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 5.1e-46 189.1 309 45.6
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 6.7e-46 188.7 348 44.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.5e-45 187.6 346 43.9
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.5e-45 186.8 354 49.2
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 3.3e-45 186.4 327 53.2
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 4.3e-45 186.0 325 48.6
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 5.6e-45 185.7 360 43.3
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 9.6e-45 184.9 348 48.9
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 2.8e-44 183.3 345 42.6
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.1e-43 181.4 336 48.8
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.4e-43 181.0 328 52.4
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 2.4e-43 180.3 329 43.2
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 3.1e-43 179.9 344 45.6
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 3.1e-43 179.9 306 49.7
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.0e-43 179.5 308 44.5
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.2e-42 177.9 312 49.0
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.5e-42 177.6 352 39.8
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.0e-41 174.9 320 50.0
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.0e-41 174.9 328 48.2
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.7e-41 174.1 321 45.8
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.9e-41 173.3 345 47.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 3.8e-41 172.9 325 51.7
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.5e-41 172.2 334 47.9
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 8.4e-41 171.8 320 51.2
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.1e-40 171.4 319 48.6
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.9e-40 170.6 312 51.6
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.5e-40 169.1 313 42.2
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.6e-39 167.5 329 43.8
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.1e-39 167.2 344 45.1
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.1e-39 167.2 337 46.0
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 2.7e-39 166.8 329 44.7
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.7e-39 166.8 330 57.3
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 2.7e-39 166.8 342 49.4
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.7e-39 166.8 342 49.4
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.7e-39 166.8 329 43.8
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 6.0e-39 165.6 326 52.8
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.0e-38 164.9 332 47.6
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.0e-38 164.9 327 39.8
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.0e-38 164.9 317 47.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.3e-38 164.5 332 47.6
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.8e-38 164.1 316 54.7
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.3e-38 163.7 334 47.9
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.3e-38 163.7 334 47.9
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.3e-38 163.7 334 47.9
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.3e-38 163.7 360 44.7
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 5.1e-38 162.5 323 49.5
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 6.7e-38 162.2 313 56.2
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 8.7e-38 161.8 304 49.3
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 8.7e-38 161.8 349 45.6
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.5e-37 161.0 318 47.2
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.5e-37 161.0 333 52.6
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.3e-37 159.8 324 46.9
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.3e-37 159.8 338 45.3
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.3e-37 159.5 335 45.7
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.3e-37 159.5 332 43.4
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.3e-37 159.5 327 50.8
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.7e-37 159.1 304 49.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 7.4e-37 158.7 326 49.1
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 7.4e-37 158.7 326 49.4
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.3e-36 157.9 314 42.7
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 4.8e-36 156.0 349 41.3
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 8.2e-36 155.2 318 51.9
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 8.2e-36 155.2 345 42.9
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.8e-35 154.1 351 49.3
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.8e-35 154.1 322 44.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 4.1e-35 152.9 320 45.9
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 6.9e-35 152.1 326 46.0
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 6.9e-35 152.1 334 45.5
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 9.0e-35 151.8 384 38.8
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.2e-34 151.4 331 45.3
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.2e-34 151.4 205 50.2
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.0e-34 150.6 326 45.7
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 4.5e-34 149.4 331 49.8
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 5.9e-34 149.1 334 48.2
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.0e-33 148.3 317 44.8
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.3e-33 147.9 313 50.5
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.7e-33 147.5 342 47.1
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 2.2e-33 147.1 327 46.2
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 3.8e-33 146.4 270 45.2
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 5.0e-33 146.0 315 45.7
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 5.0e-33 146.0 322 47.5
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 6.5e-33 145.6 345 43.2
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 8.5e-33 145.2 336 51.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-32 144.8 317 44.5
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.4e-32 144.4 291 46.7
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.5e-32 143.7 173 52.6
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.2e-32 142.1 332 49.1
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 7.2e-32 142.1 326 46.0
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 9.3e-32 141.7 262 49.2
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.2e-31 141.4 331 40.8
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.6e-31 139.8 304 36.8
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 3.6e-31 139.8 161 56.5
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 7.9e-31 138.7 254 50.0
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.0e-30 138.3 302 37.1
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.0e-30 138.3 394 37.6
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 8.7e-30 135.2 290 41.0
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.3e-29 133.3 319 42.3
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.7e-29 131.7 313 43.5
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.6e-28 131.0 333 43.5
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.1e-27 128.3 346 35.0
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.0e-27 125.2 335 51.3
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 1.7e-25 120.9 309 43.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 8.5e-25 118.6 231 38.5
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 8.5e-25 118.6 201 60.2
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.2e-24 116.3 335 50.4
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 7.2e-24 115.5 210 40.5
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 7.2e-24 115.5 332 40.7
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 9.4e-24 115.2 280 40.0
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.2e-23 114.8 340 37.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.6e-23 114.4 179 45.3
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.7e-23 113.6 340 37.4
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 4.6e-23 112.8 319 42.6
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.4e-22 111.3 230 43.9
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 6.7e-22 109.0 272 40.4
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.5e-21 107.8 336 33.0
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.7e-20 104.4 354 39.5
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 1.7e-20 104.4 147 49.7
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-19 101.3 119 51.3
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-19 101.3 307 48.5
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 3.1e-19 100.1 344 38.1
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.2e-17 94.0 165 43.0
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.9e-17 93.6 302 34.4
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.5e-17 92.4 285 40.0
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 8.5e-17 92.0 252 36.1
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.1e-16 91.7 316 32.6
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 4.2e-16 89.7 150 42.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 6.7e-14 82.4 336 30.4
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.3e-13 80.1 317 32.2
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 2.2e-12 77.4 353 36.0
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 3.1e-11 73.6 343 30.9
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 4.1e-11 73.2 368 35.1
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 7.0e-11 72.4 189 43.4
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-09 68.6 294 38.4
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 2.5e-08 63.9 67 59.7
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 3.0e-06 57.0 173 32.9


User provided reference genes

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