Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 0.0e+00 2438.7 1372 100.0
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1357.0 1366 59.9
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1193.7 1301 58.0
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1184.9 1531 49.1
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 0.0e+00 1181.4 1303 57.9
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1168.3 1424 50.8
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1159.8 1413 49.0
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1158.3 1374 51.5
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1147.1 1369 50.7
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1144.0 1426 52.8
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1131.7 1535 52.2
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1130.9 1346 54.0
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1126.7 1482 46.2
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1122.8 1305 54.9
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1121.3 1409 50.9
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1109.0 1398 54.0
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1105.9 1394 52.2
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1102.4 1379 51.0
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1101.7 1368 52.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1101.3 1352 50.7
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1101.3 1381 51.5
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1098.2 1371 51.8
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1096.3 1396 51.1
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1094.0 1363 51.0
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1084.7 1379 54.5
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1083.2 1373 51.7
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1082.0 1448 47.1
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1079.7 1366 50.2
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 9.4e-312 1074.7 1511 45.7
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 9.4e-312 1074.3 1385 51.4
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 9.4e-312 1074.3 1308 53.1
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 9.4e-312 1073.9 1410 49.1
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 4.7e-311 1071.6 1422 47.7
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 4.7e-311 1071.6 1388 51.0
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 8.4e-311 1070.8 1389 50.5
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 1.3e-308 1063.5 1512 44.7
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 1.1e-307 1060.4 1482 50.5
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 6.9e-305 1051.2 1517 49.6
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 6.9e-305 1051.2 1527 47.1
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 2.9e-303 1045.8 1360 45.4
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 4.2e-302 1042.0 1364 45.5
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.3e-300 1036.2 1317 46.9
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 1.1e-299 1033.9 1493 43.1
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 1.9e-299 1033.1 1382 49.3
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 3.3e-299 1032.3 1336 50.2
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 5.6e-299 1031.6 1316 46.9
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 9.6e-299 1030.8 1326 49.3
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 9.6e-299 1030.8 1367 50.9
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 1.3e-298 1030.4 1354 51.6
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 2.8e-298 1029.2 1464 49.1
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 3.1e-297 1025.8 1495 42.4
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 1.7e-295 1020.0 1412 48.5
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 2.9e-295 1019.2 1447 46.5
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 3.8e-295 1018.8 1325 48.3
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 6.5e-295 1018.1 1550 44.1
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 1.6e-293 1013.4 1493 42.7
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 2.7e-293 1012.7 1445 50.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 2.3e-292 1009.6 1334 49.6
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 1.9e-291 1006.5 1343 46.9
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 3.3e-291 1005.7 1304 52.9
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 6.2e-290 1001.5 1414 51.0
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 1.7e-287 993.4 1317 50.8
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 2.2e-287 993.0 1522 41.8
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 3.8e-287 992.3 1299 49.0
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 5.0e-287 991.9 1337 47.7
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 4.3e-283 978.8 1363 46.8
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 9.7e-283 977.6 1354 47.1
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.3e-282 977.2 1334 50.1
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 1.6e-282 976.9 1536 42.8
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.0e-281 971.1 1345 46.1
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 2.2e-279 966.5 1455 45.3
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 6.5e-279 964.9 1487 41.0
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.5e-278 961.8 1325 52.5
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.1e-277 959.9 1343 50.8
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 6.1e-277 958.4 1780 38.0
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 6.9e-273 944.9 1343 47.9
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 1.2e-272 944.1 1588 40.1
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.5e-272 942.2 806 62.3
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 2.1e-269 933.3 1545 41.9
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 3.3e-267 926.0 1457 45.4
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.0e-263 912.1 1440 48.5
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 3.1e-257 892.9 1403 44.7
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 9.4e-254 881.3 1151 54.4
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.7e-253 879.8 734 63.4
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 5.7e-251 872.1 1482 43.0
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 6.3e-250 868.6 1297 43.3
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 4.1e-249 865.9 883 54.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.0e-248 863.6 1171 48.7
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 8.5e-247 858.2 897 52.8
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 7.3e-206 722.2 787 53.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 2.6e-203 713.8 1319 36.8
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 9.9e-203 711.8 1265 41.0
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.3e-199 700.7 1293 39.5
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 4.6e-184 649.8 1138 37.5
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.5e-177 627.5 2336 28.2
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 2.9e-170 604.0 548 59.9
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 5.7e-166 589.7 1284 35.8
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 2.0e-163 581.3 716 47.3
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 2.5e-161 574.3 1436 31.2
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.7e-154 551.6 833 40.9
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.7e-136 490.3 1294 31.4
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 7.5e-134 483.0 832 44.0
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.0e-127 462.6 1178 34.6
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 8.6e-122 443.0 410 59.0
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 6.4e-109 400.2 555 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.1e-104 385.2 1465 28.6
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 4.7e-104 384.0 1522 31.9
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.1e-98 364.0 472 44.1
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 1.2e-94 352.8 725 34.2
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.9e-92 345.5 316 61.7
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 2.9e-85 321.6 1411 30.0
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 9.6e-81 306.6 311 53.7
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.8e-79 302.4 290 52.4
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 1.3e-77 296.2 319 55.8
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.5e-75 288.1 320 54.7
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 9.3e-68 263.5 320 46.9
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 7.1e-60 237.3 225 56.9
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.8e-58 232.6 245 51.8
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.5e-53 213.8 729 28.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.4e-47 196.4 270 43.7
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.4e-46 191.8 153 65.4
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 8.8e-42 177.2 249 47.8
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.7e-40 171.8 384 31.2
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-37 163.7 789 23.4
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 3.6e-35 155.2 127 60.6
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.4e-34 153.3 154 53.2
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.2e-32 146.0 401 27.2
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.9e-28 132.9 408 30.6
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 4.2e-28 131.7 155 50.3
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.5e-25 123.2 647 24.6
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 2.0e-22 112.8 100 57.0
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.1e-19 102.8 102 52.0
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.0e-18 100.5 72 66.7
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.3e-18 99.4 181 36.5
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 5.2e-18 98.2 215 30.7
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 9.1e-15 87.4 247 28.7
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.9e-14 84.7 87 56.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 8.8e-10 70.9 64 60.9
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 3.4e-09 68.9 56 64.3
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 4.4e-09 68.6 351 24.5
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 5.7e-09 68.2 53 66.0


User provided reference genes

Program Settings