Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 7.3e-149 530.8 319 100.0
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 6.8e-54 215.3 315 46.3
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 1.7e-52 210.7 291 48.5
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 3.7e-52 209.5 326 46.9
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 4.1e-51 206.1 311 45.3
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 5.4e-51 205.7 312 46.2
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.6e-50 204.1 270 47.0
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 5.0e-49 199.1 292 42.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.5e-48 197.6 294 45.9
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.5e-48 195.7 297 45.1
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 9.4e-48 194.9 296 44.9
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 2.7e-47 193.4 295 44.1
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 4.7e-47 192.6 265 46.4
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 8.0e-47 191.8 306 43.1
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 3.0e-46 189.9 287 41.1
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 4.0e-46 189.5 331 41.7
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 6.8e-46 188.7 283 46.3
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 6.8e-46 188.7 283 46.3
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.5e-45 187.6 293 43.7
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 3.4e-45 186.4 306 43.8
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 7.5e-45 185.3 295 41.0
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.8e-44 183.3 284 41.5
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 6.3e-44 182.2 193 52.8
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 3.1e-43 179.9 291 44.7
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 5.4e-43 179.1 269 44.6
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 5.4e-43 179.1 269 44.6
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 9.2e-43 178.3 299 43.5
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 3.5e-42 176.4 300 42.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.7e-41 174.1 313 42.5
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 3.8e-41 172.9 294 43.5
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 1.5e-40 171.0 332 39.8
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.9e-40 170.6 285 44.6
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.2e-39 167.9 273 45.8
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.6e-39 167.5 315 41.0
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.6e-39 167.5 252 43.7
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.6e-39 167.5 171 54.4
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 1.6e-39 167.5 171 59.1
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.6e-39 167.5 189 48.7
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 4.7e-39 166.0 178 55.6
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 4.7e-39 166.0 285 42.8
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.4e-38 164.5 252 44.8
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.8e-38 164.1 301 39.9
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 4.0e-38 162.9 160 54.4
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.0e-38 162.9 160 54.4
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.0e-38 162.9 160 54.4
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 5.2e-38 162.5 290 41.7
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 6.8e-38 162.2 171 52.6
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 1.5e-37 161.0 175 57.1
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 2.6e-37 160.2 157 61.1
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 2.6e-37 160.2 353 38.0
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 7.5e-37 158.7 258 43.0
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 9.8e-37 158.3 353 36.5
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 1.7e-36 157.5 260 42.3
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 2.2e-36 157.1 284 39.8
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 6.4e-36 155.6 276 39.1
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 8.3e-36 155.2 186 50.5
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 8.3e-36 155.2 175 51.4
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.1e-35 154.8 296 37.5
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 1.1e-35 154.8 254 38.6
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.4e-35 154.5 163 57.7
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.4e-35 154.5 276 44.2
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 1.8e-35 154.1 288 38.9
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.4e-35 153.7 294 43.9
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 4.1e-35 152.9 198 47.5
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 5.4e-35 152.5 176 56.2
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.4e-35 152.5 306 40.2
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.7e-34 150.2 288 37.5
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 5.9e-34 149.1 258 44.6
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.7e-33 147.5 284 37.7
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 2.3e-33 147.1 299 37.1
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 5.0e-33 146.0 217 50.2
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 5.0e-33 146.0 284 37.0
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 8.6e-33 145.2 289 38.8
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 3.3e-32 143.3 247 41.7
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 4.3e-32 142.9 267 41.6
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 5.6e-32 142.5 176 54.0
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 5.6e-32 142.5 251 47.8
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 2.8e-31 140.2 331 34.4
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 3.6e-31 139.8 252 38.5
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 3.6e-31 139.8 313 36.7
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 8.0e-31 138.7 293 38.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.0e-30 138.3 296 34.5
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 2.3e-30 137.1 293 34.8
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 3.1e-30 136.7 292 37.7
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 6.8e-30 135.6 184 46.2
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 8.9e-30 135.2 299 36.1
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 3.4e-29 133.3 280 36.4
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 4.4e-29 132.9 297 37.7
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 7.5e-29 132.1 177 44.1
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 9.8e-29 131.7 160 53.8
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 2.2e-28 130.6 268 40.7
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 4.9e-28 129.4 177 48.0
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 4.9e-28 129.4 190 47.4
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 6.4e-28 129.0 260 40.8
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 6.4e-28 129.0 136 60.3
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 8.3e-28 128.6 285 37.2
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 5.4e-27 125.9 280 38.2
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 7.0e-27 125.6 150 52.7
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 2.0e-26 124.0 186 45.7
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 3.5e-26 123.2 295 36.9
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 7.8e-26 122.1 300 36.7
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 1.3e-25 121.3 290 35.9
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 1.3e-25 121.3 284 35.6
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.0e-25 120.2 321 35.2
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 3.9e-25 119.8 167 46.1
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 1.1e-24 118.2 256 38.3
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.5e-24 117.9 246 36.2
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.9e-24 117.5 271 37.3
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 3.3e-24 116.7 300 35.7
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 1.6e-23 114.4 276 36.6
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.1e-23 114.0 252 37.3
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 2.1e-23 114.0 150 48.0
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 6.2e-23 112.5 139 54.7
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 8.1e-23 112.1 128 50.0
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.3e-22 110.5 291 34.4
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 4.0e-22 109.8 151 49.7
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 2.9e-20 103.6 191 36.6
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.0e-17 95.1 336 29.8
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 3.0e-17 93.6 124 50.8
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 3.9e-17 93.2 158 47.5
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.1e-16 91.7 165 34.5
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.9e-16 90.9 255 34.9
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.9e-16 90.9 172 35.5
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 2.1e-15 87.4 91 47.3
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.1e-15 87.4 296 30.1
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 6.2e-15 85.9 165 38.2
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.1e-14 85.1 241 31.1
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 9.9e-13 78.6 57 64.9
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 2.9e-12 77.0 92 52.2
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 8.4e-12 75.5 137 40.9
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.4e-11 74.7 81 48.1
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 1.2e-10 71.6 112 42.9
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 1.6e-10 71.2 174 33.9
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.0e-09 68.6 60 55.0
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 1.0e-09 68.6 117 37.6
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 1.7e-09 67.8 99 41.4
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 6.6e-09 65.9 112 38.4
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 9.6e-08 62.0 90 45.6
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 1.4e-06 58.2 83 42.2
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 1.4e-06 58.2 251 27.9
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 6.8e-06 55.8 88 43.2


User provided reference genes

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