Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 4.2e-248 860.9 437 100.0
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 2.1e-191 672.5 403 77.4
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 8.3e-180 634.0 400 73.0
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.7e-177 626.3 373 78.0
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 3.0e-177 625.5 373 78.0
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.9e-177 625.2 405 72.1
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.9e-177 625.2 382 76.2
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 6.6e-177 624.4 398 73.9
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 8.6e-177 624.0 373 77.7
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 5.6e-176 621.3 384 75.3
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 7.3e-176 620.9 395 73.9
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 9.5e-176 620.5 380 76.6
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.2e-175 620.2 401 72.3
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.1e-175 619.4 393 73.5
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 6.2e-175 617.8 392 72.4
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 6.2e-175 617.8 389 73.8
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 8.1e-175 617.5 405 72.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 8.1e-175 617.5 397 73.3
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 3.1e-174 615.5 393 73.0
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 6.8e-174 614.4 384 74.7
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 2.0e-173 612.8 391 72.4
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.6e-173 612.5 391 72.4
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 2.6e-173 612.5 406 70.7
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 4.4e-173 611.7 381 75.6
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 4.4e-173 611.7 395 71.6
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 2.9e-172 609.0 377 74.8
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 3.8e-172 608.6 389 71.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 6.4e-172 607.8 372 73.7
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.4e-171 606.7 397 72.0
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 2.4e-171 605.9 398 70.9
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 5.4e-171 604.7 401 71.3
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 7.1e-171 604.4 393 71.8
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 7.1e-171 604.4 362 78.2
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 9.2e-171 604.0 419 69.0
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.6e-170 603.2 398 71.6
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 3.5e-170 602.1 403 69.2
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 1.3e-169 600.1 417 68.8
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 1.7e-169 599.7 399 71.9
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 2.3e-169 599.4 422 67.5
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 2.3e-169 599.4 376 73.4
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 3.0e-169 599.0 408 69.1
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.1e-169 598.2 432 67.1
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.6e-169 597.8 390 73.1
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 8.7e-169 597.4 399 70.9
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.5e-168 596.7 399 70.2
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 1.5e-168 596.7 408 68.9
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 4.3e-168 595.1 407 69.8
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 7.3e-168 594.3 389 71.5
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.2e-167 593.6 401 70.3
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 2.1e-167 592.8 391 71.1
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 2.1e-167 592.8 391 70.6
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.4e-166 590.1 382 71.7
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 4.0e-166 588.6 373 72.4
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 5.3e-166 588.2 398 71.1
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 5.3e-166 588.2 389 70.7
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 2.0e-165 586.3 393 69.7
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.0e-165 586.3 392 71.7
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 2.6e-165 585.9 393 72.5
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 3.4e-165 585.5 378 72.2
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 7.6e-165 584.3 402 69.7
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 7.6e-165 584.3 402 69.7
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.3e-164 583.6 387 71.1
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 2.9e-164 582.4 400 68.5
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.9e-164 582.4 402 68.9
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 3.8e-164 582.0 374 73.5
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 4.9e-164 581.6 403 68.2
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 6.4e-164 581.3 403 68.5
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 6.4e-164 581.3 379 71.5
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.4e-163 580.1 385 71.4
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.4e-163 580.1 385 71.7
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 2.4e-163 579.3 406 67.5
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 4.2e-163 578.6 397 69.5
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 7.1e-163 577.8 404 68.1
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.6e-162 576.6 393 70.0
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.6e-162 576.6 360 74.7
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 6.6e-161 571.2 372 71.8
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 3.3e-160 568.9 350 76.3
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 2.8e-159 565.8 373 71.3
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.8e-158 563.1 414 66.9
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 5.3e-158 561.6 410 65.4
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 9.0e-158 560.8 400 66.2
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.3e-156 557.0 367 70.8
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 6.0e-154 548.1 375 68.8
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.9e-152 543.1 399 65.7
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.5e-152 542.7 363 72.7
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 7.4e-152 541.2 381 68.0
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 3.7e-151 538.9 410 64.9
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 2.5e-144 516.2 386 62.4
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 5.3e-142 508.4 389 64.5
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.2e-141 507.3 371 66.3
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 7.1e-139 498.0 379 60.7
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 2.1e-138 496.5 355 65.9
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 8.7e-137 491.1 424 56.8
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 8.5e-132 474.6 320 71.9
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 5.5e-131 471.9 335 67.8
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.3e-129 466.5 366 60.1
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 4.1e-126 455.7 404 59.4
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.8e-121 440.3 277 73.6
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 1.4e-118 430.6 270 74.1
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.4e-118 429.9 407 55.0
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 4.7e-114 415.6 373 53.6
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 4.7e-114 415.6 375 53.1
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 2.9e-92 343.2 245 67.3
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 3.3e-91 339.7 277 58.8
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.3e-89 333.6 232 68.1
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 1.6e-85 320.9 383 46.0
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.2e-80 304.7 179 77.7
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 2.4e-78 297.0 437 39.8
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.2e-78 296.6 280 54.6
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.7e-77 293.5 167 80.2
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.7e-77 293.5 167 80.2
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 2.8e-74 283.5 393 41.7
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.0e-65 253.1 146 78.8
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 3.5e-53 213.4 138 72.5
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 4.8e-50 203.0 127 74.8
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 3.8e-47 193.4 201 53.7
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.7e-44 184.5 99 82.8
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 1.8e-41 174.5 123 65.9
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 2.9e-39 167.2 298 36.2
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.8e-39 166.8 115 68.7
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.3e-36 158.3 85 81.2
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 1.8e-36 157.9 102 70.6
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 5.6e-35 152.9 89 76.4
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.0e-32 144.4 127 59.1
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 2.7e-29 134.0 88 65.9
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 4.6e-21 106.7 137 43.8
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 7.9e-21 105.9 199 37.2
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 5.3e-17 93.2 68 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 1.8e-09 68.2 265 24.2
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 3.1e-09 67.4 352 22.2
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.3e-07 62.0 330 23.3
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 2.2e-07 61.2 207 25.1
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 2.2e-07 61.2 207 25.1
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 3.8e-07 60.5 207 25.1
BraA08t33644Z Brassica rapa HOM05D003825 ORTHO05D004491 5.0e-07 60.1 244 23.0
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 1.4e-06 58.5 248 24.2
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 1.4e-06 58.5 208 25.0
C07p60600 Brassica napus HOM05D003825 ORTHO05D004491 1.9e-06 58.2 274 23.0
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 1.9e-06 58.2 274 23.0
SalBow6G4765 Salvia bowleyana HOM05D003825 ORTHO05D004491 3.2e-06 57.4 240 20.0
SalBow6G5747 Salvia bowleyana HOM05D003825 ORTHO05D004491 3.2e-06 57.4 240 20.0
AT4G34460 Arabidopsis thaliana HOM05D003825 ORTHO05D004491 7.2e-06 56.2 264 21.6
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 9.4e-06 55.8 264 21.6


User provided reference genes

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