Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 9.9e-65 250.4 167 100.0
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 7.2e-23 111.3 123 70.7
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 1.3e-19 100.5 123 69.9
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 3.7e-19 99.0 107 71.0
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 4.8e-19 98.6 113 69.9
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 8.2e-19 97.8 95 77.9
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 1.1e-18 97.4 135 60.7
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 1.1e-18 97.4 126 64.3
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 1.4e-18 97.1 113 70.8
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 1.8e-18 96.7 120 70.8
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 5.3e-18 95.1 114 67.5
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 2.0e-17 93.2 115 67.0
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 3.5e-17 92.4 92 77.2
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 7.7e-17 91.3 117 65.8
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 7.7e-17 91.3 114 63.2
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 7.7e-17 91.3 97 76.3
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.0e-16 90.9 106 71.7
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.3e-16 90.5 95 69.5
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.3e-16 90.5 95 69.5
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 1.7e-16 90.1 122 60.7
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.7e-16 90.1 110 67.3
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 2.2e-16 89.7 146 55.5
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 2.2e-16 89.7 93 75.3
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 2.9e-16 89.4 87 81.6
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 2.9e-16 89.4 93 75.3
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 3.8e-16 89.0 122 61.5
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 3.8e-16 89.0 115 65.2
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 3.8e-16 89.0 92 71.7
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 5.0e-16 88.6 114 66.7
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 5.0e-16 88.6 114 66.7
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 1.1e-15 87.4 122 61.5
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 1.5e-15 87.0 93 74.2
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.9e-15 86.7 102 70.6
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 1.9e-15 86.7 121 62.8
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 2.5e-15 86.3 106 67.0
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 2.5e-15 86.3 88 81.8
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 2.5e-15 86.3 97 74.2
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 4.2e-15 85.5 110 67.3
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 9.4e-15 84.3 90 65.6
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.6e-14 83.6 116 62.9
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 2.7e-14 82.8 92 73.9
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 6.1e-14 81.6 121 62.8
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 6.1e-14 81.6 121 61.2
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 6.1e-14 81.6 92 72.8
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 8.0e-14 81.3 100 73.0
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 8.0e-14 81.3 92 72.8
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 1.0e-13 80.9 160 51.9
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.0e-13 80.9 86 81.4
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 1.0e-13 80.9 86 81.4
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.8e-13 80.1 82 76.8
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 2.3e-13 79.7 121 62.0
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 2.3e-13 79.7 114 64.9
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 2.3e-13 79.7 113 61.9
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 3.0e-13 79.3 99 73.7
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 5.2e-13 78.6 87 75.9
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 5.2e-13 78.6 92 71.7
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 6.7e-13 78.2 114 64.9
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 8.8e-13 77.8 122 58.2
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 1.2e-12 77.4 66 62.1
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 1.5e-12 77.0 86 79.1
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 1.5e-12 77.0 117 59.8
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 2.0e-12 76.6 92 70.7
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 2.6e-12 76.3 82 73.2
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 4.4e-12 75.5 101 71.3
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 4.4e-12 75.5 95 68.4
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 4.4e-12 75.5 123 58.5
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 5.7e-12 75.1 87 69.0
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 7.5e-12 74.7 81 77.8
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 7.5e-12 74.7 111 60.4
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 1.7e-11 73.6 117 62.4
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 2.2e-11 73.2 86 76.7
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 2.2e-11 73.2 86 76.7
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 2.8e-11 72.8 88 72.7
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 6.3e-11 71.6 102 61.8
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 8.2e-11 71.2 119 58.0
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.1e-10 70.9 98 71.4
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 1.4e-10 70.5 53 66.0
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 1.4e-10 70.5 88 71.6
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 2.4e-10 69.7 98 63.3
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 3.1e-10 69.3 88 71.6
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 7.0e-10 68.2 110 60.9
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 2.7e-09 66.2 38 71.1
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 5.9e-09 65.1 42 71.4
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 1.7e-08 63.5 48 62.5
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 1.5e-07 60.5 41 68.3
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 2.5e-07 59.7 40 62.5


User provided reference genes

Program Settings