Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 0.0e+00 1102.4 576 100.0
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 8.8e-145 518.1 574 50.5
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 9.1e-142 508.1 644 46.9
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 4.5e-141 505.8 574 49.7
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 2.0e-136 490.3 626 47.8
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 2.8e-135 486.5 622 48.7
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 1.2e-133 481.1 627 46.1
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 7.7e-133 478.4 556 50.7
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 9.4e-131 471.5 593 48.4
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 2.7e-130 469.9 574 49.3
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 3.0e-129 466.5 626 43.9
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.0e-128 463.8 576 47.2
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 9.8e-128 461.5 613 47.1
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 1.3e-127 461.1 609 44.0
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 2.8e-127 459.9 633 45.7
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 3.7e-127 459.5 626 46.0
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 8.3e-127 458.4 619 46.7
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 1.1e-126 458.0 623 46.5
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 3.1e-126 456.4 608 43.6
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 4.1e-126 456.1 586 46.9
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 4.1e-126 456.1 629 45.3
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 7.7e-125 451.8 608 44.2
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 7.7e-125 451.8 621 46.4
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 1.0e-124 451.4 608 47.4
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 2.9e-124 449.9 573 46.8
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 1.5e-123 447.6 628 43.2
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 7.2e-123 445.3 626 45.2
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 4.7e-122 442.6 587 44.6
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 1.0e-121 441.4 637 43.6
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 1.4e-121 441.0 627 43.7
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 2.3e-121 440.3 603 44.4
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 3.0e-121 439.9 554 47.8
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 4.0e-121 439.5 604 45.0
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 6.8e-121 438.7 567 47.3
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 6.8e-121 438.7 625 44.5
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 3.7e-119 433.0 633 43.3
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 4.9e-119 432.6 611 45.2
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 6.3e-119 432.2 602 44.5
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.1e-118 431.4 631 43.4
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 1.8e-118 430.6 619 43.8
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 4.1e-118 429.5 621 43.8
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 2.7e-117 426.8 579 45.8
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.3e-116 424.5 659 42.0
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 3.9e-116 422.9 619 44.1
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 6.6e-116 422.2 629 43.6
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 2.5e-115 420.2 618 43.2
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 5.6e-115 419.1 671 41.1
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 7.3e-115 418.7 620 42.3
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 9.5e-115 418.3 577 45.4
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 9.5e-115 418.3 623 43.3
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 2.1e-114 417.2 626 43.1
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 4.7e-114 416.0 577 44.2
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 4.7e-114 416.0 640 42.3
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 1.4e-113 414.5 632 41.3
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 2.3e-113 413.7 621 42.0
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 4.0e-113 412.9 619 42.0
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 5.2e-113 412.5 618 41.6
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 1.2e-112 411.4 621 41.9
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 1.2e-112 411.4 621 42.5
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 1.5e-112 411.0 628 41.7
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 3.4e-112 409.8 607 43.3
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 2.9e-111 406.8 621 42.2
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 3.7e-111 406.4 652 42.2
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 8.3e-111 405.2 581 42.3
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 2.4e-110 403.7 607 43.0
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 3.2e-110 403.3 591 42.5
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 7.0e-110 402.1 609 41.7
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 3.9e-108 396.4 603 41.6
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 1.1e-107 394.8 603 39.8
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 3.3e-107 393.3 537 43.9
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.2e-103 380.6 507 45.0
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 3.2e-102 376.7 568 41.9
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 7.1e-102 375.6 646 39.6
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 3.5e-101 373.2 673 37.1
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 7.8e-101 372.1 673 36.7
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 7.8e-101 372.1 496 47.6
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 2.3e-100 370.5 591 43.1
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 6.6e-100 369.0 601 42.3
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 5.6e-99 365.9 698 36.0
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 4.1e-94 349.7 420 51.2
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 5.4e-94 349.4 638 37.9
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 3.9e-92 343.2 455 44.6
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 5.6e-91 339.3 432 46.3
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 8.9e-89 332.0 583 41.0
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 8.9e-89 332.0 449 46.3
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 1.5e-88 331.3 595 37.6
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 1.3e-87 328.2 473 45.7
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 2.4e-86 323.9 372 52.4
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 5.6e-83 312.8 356 51.1
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 1.6e-82 311.2 323 53.6
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 2.2e-79 300.8 345 52.5
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 3.2e-78 297.0 462 40.5
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 1.2e-77 295.0 602 36.0
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 1.0e-76 292.0 647 35.2
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 1.6e-69 268.1 502 38.4
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.3e-68 264.2 556 34.7
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 6.2e-66 256.1 577 33.1
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 6.2e-66 256.1 428 38.6
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 6.9e-65 252.7 286 51.4
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.2e-61 241.9 428 37.4
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 2.5e-59 234.2 629 32.3
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 8.2e-58 229.2 428 35.5
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 8.8e-44 182.6 233 47.2
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 2.6e-32 144.4 593 25.5
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 3.3e-27 127.5 206 38.8
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 1.8e-25 121.7 200 38.5
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 1.8e-25 121.7 145 45.5
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 5.2e-20 103.6 209 34.0
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 2.0e-19 101.7 112 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 6.3e-18 96.7 574 24.2
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 1.6e-16 92.0 158 38.0
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 2.0e-16 91.7 219 27.9
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 2.9e-15 87.8 153 39.9
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 6.5e-15 86.7 93 51.6
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 2.5e-14 84.7 67 64.2
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 4.4e-11 73.9 79 53.2
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 1.4e-09 68.9 170 32.9
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 7.7e-08 63.2 256 27.0
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 1.0e-07 62.8 360 26.1


User provided reference genes

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