Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 1.4e-264 916.0 559 100.0
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 3.3e-112 409.8 571 55.9
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 2.4e-107 393.7 572 55.4
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 2.1e-106 390.6 573 56.0
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 9.6e-96 355.1 573 51.3
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 5.8e-93 345.9 586 48.6
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 5.8e-93 345.9 591 50.8
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 1.7e-92 344.4 594 48.1
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 5.4e-91 339.3 590 49.7
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 1.2e-90 338.2 589 48.6
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 3.5e-90 336.7 591 50.4
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 6.0e-90 335.9 575 48.5
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 7.8e-90 335.5 586 50.2
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 1.3e-89 334.7 597 48.2
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 3.0e-89 333.6 593 49.2
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 8.7e-89 332.0 583 50.1
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 1.5e-88 331.3 591 50.3
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 1.9e-88 330.9 582 50.2
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 1.6e-87 327.8 597 49.4
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 4.8e-87 326.2 590 48.3
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 6.2e-87 325.9 590 47.6
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 2.4e-86 323.9 584 49.5
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 3.1e-86 323.6 585 46.7
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 5.3e-86 322.8 567 48.5
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 2.6e-85 320.5 587 49.2
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 3.4e-85 320.1 582 47.6
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 6.4e-84 315.8 590 48.8
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 7.1e-83 312.4 576 48.1
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 2.3e-81 307.4 643 45.4
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 3.0e-81 307.0 641 34.8
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 3.9e-81 306.6 458 41.7
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 1.9e-80 304.3 582 45.7
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 1.4e-78 298.1 555 50.1
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 2.4e-78 297.4 588 45.1
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 4.0e-78 296.6 628 43.5
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 9.0e-78 295.4 583 46.7
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.4e-77 293.5 556 46.4
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 1.3e-76 291.6 588 46.8
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 2.9e-76 290.4 572 46.9
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 4.9e-76 289.7 477 37.7
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 6.5e-76 289.3 588 45.1
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 8.4e-76 288.9 579 47.5
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 1.4e-75 288.1 482 38.4
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.4e-75 288.1 597 42.9
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 1.9e-75 287.7 481 37.0
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 5.5e-75 286.2 474 39.5
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 2.7e-74 283.9 589 45.0
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 3.5e-74 283.5 594 45.1
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 5.1e-73 279.6 479 38.4
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 1.5e-72 278.1 578 45.0
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 2.5e-72 277.3 584 46.4
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 3.3e-72 276.9 476 38.0
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 3.3e-72 276.9 585 45.8
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 9.6e-72 275.4 482 36.7
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 2.8e-71 273.9 587 46.0
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 3.7e-71 273.5 498 36.1
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 3.7e-71 273.5 573 43.8
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 1.1e-70 271.9 576 43.9
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 4.0e-70 270.0 576 45.8
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 9.0e-70 268.9 596 44.5
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 2.6e-69 267.3 475 38.1
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 1.7e-68 264.6 437 39.1
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 2.9e-68 263.8 582 47.4
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 6.5e-68 262.7 573 45.2
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 1.1e-67 261.9 579 44.6
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 1.9e-67 261.2 481 37.0
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 7.1e-67 259.2 582 47.1
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 9.3e-67 258.8 500 37.0
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 1.2e-66 258.5 571 46.2
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 2.1e-66 257.7 528 44.5
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 1.0e-65 255.4 566 41.7
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 3.9e-65 253.4 576 46.9
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 8.7e-65 252.3 572 45.1
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 1.1e-64 251.9 580 46.7
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 1.9e-64 251.1 575 46.8
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 2.5e-64 250.8 578 44.3
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 1.5e-61 241.5 603 44.8
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.0e-61 241.1 571 41.7
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 7.7e-61 239.2 585 41.4
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 1.7e-60 238.0 583 44.1
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 4.2e-59 233.4 590 42.4
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 7.2e-59 232.6 572 42.7
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 1.5e-56 224.9 408 54.4
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 5.3e-54 216.5 588 40.3
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 1.0e-52 212.2 599 39.6
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 1.8e-46 191.4 433 33.5
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 7.0e-46 189.5 470 31.3
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 9.1e-38 162.5 445 46.3
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 1.0e-36 159.1 448 44.6
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 1.7e-36 158.3 575 31.0
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 2.9e-36 157.5 544 36.2
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.2e-35 154.1 175 49.1
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 5.5e-35 153.3 448 27.7
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 7.2e-35 152.9 169 47.9
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 2.7e-34 151.0 438 29.5
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 3.7e-31 140.6 334 32.9
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 4.8e-31 140.2 437 28.8
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 1.3e-20 105.5 153 38.6
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 4.7e-18 97.1 76 63.2
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 4.9e-15 87.0 275 31.6
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.2e-14 84.3 267 33.0
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 2.7e-13 81.3 511 22.7
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.9e-11 75.1 46 67.4
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 1.6e-10 72.0 113 40.7
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 4.0e-09 67.4 81 43.2
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 2.6e-08 64.7 106 40.6
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 1.1e-06 59.3 80 45.0
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 9.2e-06 56.2 241 24.1


User provided reference genes

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