Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0005330 Simmondsia chinensis HOM05D000018 ORTHO05D000187 8.3e-23 109.4 51 100.0
Sc17g0005410 Simmondsia chinensis HOM05D000018 ORTHO05D000187 1.6e-18 95.1 51 84.3
Sc17g0005320 Simmondsia chinensis HOM05D000018 ORTHO05D000187 8.1e-18 92.8 50 80.0
Sc17g0005290 Simmondsia chinensis HOM05D000018 ORTHO05D000187 1.7e-15 85.1 49 77.6
Sc17g0005300 Simmondsia chinensis HOM05D000018 ORTHO05D000187 1.7e-15 85.1 49 77.6
Sc17g0005350 Simmondsia chinensis HOM05D000018 ORTHO05D000187 1.6e-13 78.6 49 71.4
Sc17g0005360 Simmondsia chinensis HOM05D000018 ORTHO05D000187 2.7e-13 77.8 49 71.4
Sc17g0005370 Simmondsia chinensis HOM05D000018 ORTHO05D000187 7.8e-13 76.3 49 71.4
Sc17g0005280 Simmondsia chinensis HOM05D000018 ORTHO05D000187 1.0e-12 75.9 49 71.4
Sc17g0005400 Simmondsia chinensis HOM05D000018 ORTHO05D000187 1.3e-12 75.5 48 72.9
Sc17g0005390 Simmondsia chinensis HOM05D000018 ORTHO05D000187 3.9e-12 73.9 49 65.3
Sc17g0005380 Simmondsia chinensis HOM05D000018 ORTHO05D000187 3.6e-10 67.4 49 61.2
CSS0036983 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000187 1.1e-09 65.9 47 59.6
CSS0045588 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000187 1.8e-09 65.1 47 59.6
CSS0010714 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000187 3.1e-09 64.3 47 57.4
Dinv32302 Davidia involucrata HOM05D000018 ORTHO05D000187 5.3e-09 63.5 47 59.6
Lj4g0025860 Lotus japonicus HOM05D000018 ORTHO05D000187 6.9e-09 63.2 49 61.2
MD11G1272400 Malus domestica HOM05D000018 ORTHO05D000187 6.9e-09 63.2 47 59.6
Glyma.12G235300 Glycine max HOM05D000018 ORTHO05D000187 1.2e-08 62.4 49 57.1
Atru.chr10.1445 Acer truncatum HOM05D000018 ORTHO05D000187 2.0e-08 61.6 49 57.1
Lj4g0024331 Lotus japonicus HOM05D000018 ORTHO05D000187 4.4e-08 60.5 49 61.2
Manes.17G063900 Manihot esculenta HOM05D000018 ORTHO05D000187 4.4e-08 60.5 49 53.1
arahy.Tifrunner.gnm1.ann1.UA577I Arachis hypogaea HOM05D000018 ORTHO05D000187 5.8e-08 60.1 49 57.1
arahy.Tifrunner.gnm1.ann1.ZH3HJS Arachis hypogaea HOM05D000018 ORTHO05D000187 5.8e-08 60.1 49 57.1
Glyma.05G137500 Glycine max HOM05D000018 ORTHO05D000187 5.8e-08 60.1 47 55.3
MD11G1271400 Malus domestica HOM05D000018 ORTHO05D000187 5.8e-08 60.1 47 57.4
Phvul.002G184400 Phaseolus vulgaris HOM05D000018 ORTHO05D000187 5.8e-08 60.1 47 53.2
arahy.Tifrunner.gnm1.ann1.B0Q1WP Arachis hypogaea HOM05D000018 ORTHO05D000187 7.6e-08 59.7 47 55.3
PSO386G0010 Papaver somniferum HOM05D000018 ORTHO05D000187 7.6e-08 59.7 49 55.1
Dinv03638 Davidia involucrata HOM05D000018 ORTHO05D000187 9.9e-08 59.3 47 57.4
MD11G1272100 Malus domestica HOM05D000018 ORTHO05D000187 9.9e-08 59.3 47 57.4
AUR62027542 Chenopodium quinoa HOM05D000018 ORTHO05D000187 1.7e-07 58.5 48 54.2
MD11G1272000 Malus domestica HOM05D000018 ORTHO05D000187 1.7e-07 58.5 47 55.3
arahy.Tifrunner.gnm1.ann1.42JSD4 Arachis hypogaea HOM05D000018 ORTHO05D000187 2.2e-07 58.2 47 55.3
arahy.Tifrunner.gnm1.ann1.D77ZR6 Arachis hypogaea HOM05D000018 ORTHO05D000187 2.2e-07 58.2 47 55.3
Manes.17G063700 Manihot esculenta HOM05D000018 ORTHO05D000187 2.2e-07 58.2 47 53.2
Ciclev10033531m.g Citrus clementina HOM05D000018 ORTHO05D000187 2.9e-07 57.8 48 56.2
COL.COLO4_37785 Corchorus olitorius HOM05D000018 ORTHO05D000187 2.9e-07 57.8 47 51.1
Manes.03G121300 Manihot esculenta HOM05D000018 ORTHO05D000187 2.9e-07 57.8 47 55.3
Atru.chr10.1442 Acer truncatum HOM05D000018 ORTHO05D000187 3.8e-07 57.4 49 53.1
arahy.Tifrunner.gnm1.ann1.33FH8C Arachis hypogaea HOM05D000018 ORTHO05D000187 3.8e-07 57.4 47 53.2
COL.COLO4_24155 Corchorus olitorius HOM05D000018 ORTHO05D000187 3.8e-07 57.4 47 51.1
Lalb_Chr07g0187921 Lupinus albus HOM05D000018 ORTHO05D000187 3.8e-07 57.4 47 51.1
Oeu046846.1 Olea europaea HOM05D000018 ORTHO05D000187 3.8e-07 57.4 49 46.9
Oeu046847.1 Olea europaea HOM05D000018 ORTHO05D000187 3.8e-07 57.4 49 51.0
Thecc.09G138300 Theobroma cacao HOM05D000018 ORTHO05D000187 3.8e-07 57.4 47 53.2
COL.COLO4_17462 Corchorus olitorius HOM05D000018 ORTHO05D000187 4.9e-07 57.0 47 48.9
Haze_05474 Corylus avellana HOM05D000018 ORTHO05D000187 4.9e-07 57.0 47 55.3
Lj4g0005419 Lotus japonicus HOM05D000018 ORTHO05D000187 4.9e-07 57.0 47 48.9
Manes.17G064000 Manihot esculenta HOM05D000018 ORTHO05D000187 4.9e-07 57.0 46 52.2
Oeu046835.1 Olea europaea HOM05D000018 ORTHO05D000187 4.9e-07 57.0 49 49.0
PGR042G2724 Punica granatum HOM05D000018 ORTHO05D000187 4.9e-07 57.0 45 53.3
AUR62035812 Chenopodium quinoa HOM05D000018 ORTHO05D000187 6.4e-07 56.6 49 53.1
Oeu046836.1 Olea europaea HOM05D000018 ORTHO05D000187 6.4e-07 56.6 49 46.9
TAR624G0961 Trochodendron aralioides HOM05D000018 ORTHO05D000187 6.4e-07 56.6 47 51.1
CSS0045784 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D000187 8.4e-07 56.2 42 54.8
COL.COLO4_24151 Corchorus olitorius HOM05D000018 ORTHO05D000187 8.4e-07 56.2 47 48.9
Haze_05464 Corylus avellana HOM05D000018 ORTHO05D000187 8.4e-07 56.2 49 49.0
Nitab4.5_0003714g0100 Nicotiana tabacum HOM05D000018 ORTHO05D000187 8.4e-07 56.2 49 49.0
Oeu046839.1 Olea europaea HOM05D000018 ORTHO05D000187 8.4e-07 56.2 49 51.0
Potri.001G382400 Populus trichocarpa HOM05D000018 ORTHO05D000187 8.4e-07 56.2 47 57.4
QL05p060863 Quercus lobata HOM05D000018 ORTHO05D000187 8.4e-07 56.2 49 49.0
RcHm_v2.0_Chr5g0012661 Rosa chinensis HOM05D000018 ORTHO05D000187 8.4e-07 56.2 49 51.0
TPR.G22645 Trifolium pratense HOM05D000018 ORTHO05D000187 8.4e-07 56.2 47 53.2
Haze_05469 Corylus avellana HOM05D000018 ORTHO05D000187 1.1e-06 55.8 47 51.1
Oeu021532.1 Olea europaea HOM05D000018 ORTHO05D000187 1.1e-06 55.8 49 51.0
Thecc.09G138500 Theobroma cacao HOM05D000018 ORTHO05D000187 1.1e-06 55.8 47 48.9
Glyma.13G263800 Glycine max HOM05D000018 ORTHO05D000187 1.4e-06 55.5 49 53.1
Glyma.15G240600 Glycine max HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 57.4
Hma1.2p1_0608F.1_g188210 Hydrangea macrophylla HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 53.2
Lj1A1181T108 Lonicera japonica HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 48.9
MD11G1272500 Malus domestica HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 53.2
Manes.15G078000 Manihot esculenta HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 55.3
PSO210G4594 Papaver somniferum HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 51.1
QL05p060905 Quercus lobata HOM05D000018 ORTHO05D000187 1.4e-06 55.5 49 49.0
Hund18383 Selenicereus undatus HOM05D000018 ORTHO05D000187 1.4e-06 55.5 49 57.1
Thecc.07G135200 Theobroma cacao HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 46.8
TWI09G1199 Tripterygium wilfordii HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 48.9
TWI38G0640 Tripterygium wilfordii HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 51.1
TWI39G1290 Tripterygium wilfordii HOM05D000018 ORTHO05D000187 1.4e-06 55.5 47 53.2
TAR626G0867 Trochodendron aralioides HOM05D000018 ORTHO05D000187 1.4e-06 55.5 49 49.0
Atru.ctg1152.4 Acer truncatum HOM05D000018 ORTHO05D000187 1.9e-06 55.1 49 55.1
CANSAT35G0112 Cannabis sativa HOM05D000018 ORTHO05D000187 1.9e-06 55.1 47 46.8
FvH4_3g06513 Fragaria vesca HOM05D000018 ORTHO05D000187 1.9e-06 55.1 47 51.1
FAN11G0301 Fragaria x ananassa HOM05D000018 ORTHO05D000187 1.9e-06 55.1 47 51.1
PGR042G2573 Punica granatum HOM05D000018 ORTHO05D000187 1.9e-06 55.1 51 54.9
VMungo0251G2402 Vigna mungo HOM05D000018 ORTHO05D000187 1.9e-06 55.1 47 48.9
Atru.chr10.1437 Acer truncatum HOM05D000018 ORTHO05D000187 2.4e-06 54.7 49 55.1
EL10Ac8g19810 Beta vulgaris HOM05D000018 ORTHO05D000187 2.4e-06 54.7 49 49.0
Cfa001041 Carpinus fangiana HOM05D000018 ORTHO05D000187 2.4e-06 54.7 49 51.0
ECA248G2815 Erigeron canadensis HOM05D000018 ORTHO05D000187 2.4e-06 54.7 47 46.8
Lj4g0009028 Lotus japonicus HOM05D000018 ORTHO05D000187 2.4e-06 54.7 47 53.2
PGR042G1030 Punica granatum HOM05D000018 ORTHO05D000187 2.4e-06 54.7 51 52.9
Sabra16G0251800 Salix brachista HOM05D000018 ORTHO05D000187 2.4e-06 54.7 47 55.3
TPR.G27297 Trifolium pratense HOM05D000018 ORTHO05D000187 2.4e-06 54.7 47 53.2
TAR627G0285 Trochodendron aralioides HOM05D000018 ORTHO05D000187 2.4e-06 54.7 47 46.8
MSTRG.16196 Avicennia marina HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 46.8
CAN.G257.85 Capsicum annuum HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 46.8
Cfa001046 Carpinus fangiana HOM05D000018 ORTHO05D000187 3.2e-06 54.3 49 51.0
Cfa001047 Carpinus fangiana HOM05D000018 ORTHO05D000187 3.2e-06 54.3 49 46.9
Ciclev10012028m.g Citrus clementina HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 48.9
Eucgr.E02905 Eucalyptus grandis HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 48.9
Gohir.A06G051850 Gossypium hirsutum HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 51.1
Gorai.010G058700 Gossypium raimondii HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 51.1
HanXRQChr07g0189621 Helianthus annuus HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 51.1
Nn3g20940 Nelumbo nucifera HOM05D000018 ORTHO05D000187 3.2e-06 54.3 49 49.0
Prupe.4G154800 Prunus persica HOM05D000018 ORTHO05D000187 3.2e-06 54.3 47 53.2
VMungo0518G0001 Vigna mungo HOM05D000018 ORTHO05D000187 3.2e-06 54.3 49 49.0
Actinidia19482 Actinidia chinensis HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 48.9
Cfa001045 Carpinus fangiana HOM05D000018 ORTHO05D000187 4.2e-06 53.9 49 49.0
Haze_05475 Corylus avellana HOM05D000018 ORTHO05D000187 4.2e-06 53.9 49 49.0
DCAR_007915 Daucus carota HOM05D000018 ORTHO05D000187 4.2e-06 53.9 49 49.0
Duzib235G0338 Durio zibethinus HOM05D000018 ORTHO05D000187 4.2e-06 53.9 49 49.0
Duzib235G0471 Durio zibethinus HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 48.9
Lj1A1181T106 Lonicera japonica HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 48.9
MD03G1251500 Malus domestica HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 53.2
PSO386G0041 Papaver somniferum HOM05D000018 ORTHO05D000187 4.2e-06 53.9 46 52.2
Prupe.4G154900 Prunus persica HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 51.1
Sabra16G0233500 Salix brachista HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 48.9
Thecc.06G158700 Theobroma cacao HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 48.9
TWI39G0266 Tripterygium wilfordii HOM05D000018 ORTHO05D000187 4.2e-06 53.9 47 53.2
Eucgr.E02897 Eucalyptus grandis HOM05D000018 ORTHO05D000187 5.4e-06 53.5 47 51.1
Eucgr.E02899 Eucalyptus grandis HOM05D000018 ORTHO05D000187 5.4e-06 53.5 47 48.9
Gorai.010G058600 Gossypium raimondii HOM05D000018 ORTHO05D000187 5.4e-06 53.5 47 46.8
Manes.15G099500 Manihot esculenta HOM05D000018 ORTHO05D000187 5.4e-06 53.5 47 48.9
EL10Ac8g19811 Beta vulgaris HOM05D000018 ORTHO05D000187 7.1e-06 53.1 49 51.0
FvH4_3g17470 Fragaria vesca HOM05D000018 ORTHO05D000187 7.1e-06 53.1 47 53.2
FAN16G1690 Fragaria x ananassa HOM05D000018 ORTHO05D000187 7.1e-06 53.1 47 53.2
FAN25G1143 Fragaria x ananassa HOM05D000018 ORTHO05D000187 7.1e-06 53.1 47 53.2
FAN25G1169 Fragaria x ananassa HOM05D000018 ORTHO05D000187 7.1e-06 53.1 47 53.2
FAN25G2857 Fragaria x ananassa HOM05D000018 ORTHO05D000187 7.1e-06 53.1 47 53.2
Gorai.010G058200 Gossypium raimondii HOM05D000018 ORTHO05D000187 7.1e-06 53.1 45 48.9
MBI07_g25471_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D000187 7.1e-06 53.1 47 46.8
QL05p053002 Quercus lobata HOM05D000018 ORTHO05D000187 7.1e-06 53.1 49 44.9
Solyc02g071380.2 Solanum lycopersicum HOM05D000018 ORTHO05D000187 7.1e-06 53.1 49 49.0
Sopen02g020420 Solanum pennellii HOM05D000018 ORTHO05D000187 7.1e-06 53.1 49 49.0
GSVIVG01021358001 Vitis vinifera HOM05D000018 ORTHO05D000187 7.1e-06 53.1 47 48.9
Eucgr.E02892 Eucalyptus grandis HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 48.9
Hma1.2p1_0994F.1_g245591 Hydrangea macrophylla HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 48.9
Hma1.2p1_2242F.1_g317870 Hydrangea macrophylla HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 48.9
Lj1A1181G98 Lonicera japonica HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 51.1
Manes.03G077900 Manihot esculenta HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 51.1
Nitab4.5_0004447g0040 Nicotiana tabacum HOM05D000018 ORTHO05D000187 9.3e-06 52.8 49 46.9
Potri.001G355100 Populus trichocarpa HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 48.9
QL05p060881 Quercus lobata HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 46.8
TPR.G34992 Trifolium pratense HOM05D000018 ORTHO05D000187 9.3e-06 52.8 49 53.1
TWI39G1133 Tripterygium wilfordii HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 48.9
TAR624G0365 Trochodendron aralioides HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 44.7
GSVIVG01021355001 Vitis vinifera HOM05D000018 ORTHO05D000187 9.3e-06 52.8 47 48.9


User provided reference genes

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