Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 9.8e-121 436.8 220 100.0
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.1e-92 343.6 221 78.3
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.1e-92 343.6 218 78.0
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 5.6e-92 341.3 218 78.4
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.6e-91 339.7 221 77.4
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.1e-91 339.3 223 77.6
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 4.8e-91 338.2 221 76.5
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.4e-90 336.7 225 74.2
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.4e-89 332.0 223 76.7
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 4.5e-89 331.6 218 75.7
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 9.9e-89 330.5 219 73.5
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.3e-88 330.1 218 75.2
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.3e-88 330.1 222 75.2
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 1.7e-88 329.7 220 73.2
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 2.2e-88 329.3 223 74.4
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 4.9e-88 328.2 220 73.2
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 4.9e-88 328.2 226 74.3
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 6.4e-88 327.8 225 73.3
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 8.4e-88 327.4 220 73.2
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 3.2e-87 325.5 217 72.8
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.2e-87 325.5 220 73.6
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 4.2e-87 325.1 220 75.0
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 5.5e-87 324.7 218 73.4
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 5.5e-87 324.7 220 73.6
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.2e-86 323.6 220 72.7
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.2e-86 323.6 217 74.2
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.6e-86 323.2 219 71.2
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 1.6e-86 323.2 217 73.7
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.1e-86 322.8 218 73.9
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 2.1e-86 322.8 220 73.6
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 2.7e-86 322.4 224 71.4
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 2.7e-86 322.4 220 73.2
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 4.6e-86 321.6 222 72.1
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.6e-86 321.6 220 72.7
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 6.0e-86 321.2 218 71.1
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 6.0e-86 321.2 217 73.7
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 6.0e-86 321.2 217 73.3
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.9e-86 320.9 221 72.9
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 7.9e-86 320.9 220 73.2
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 7.9e-86 320.9 218 70.6
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 7.9e-86 320.9 220 72.3
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.0e-85 320.5 218 71.1
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.8e-85 319.7 221 72.9
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.9e-85 318.5 226 71.7
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 8.7e-85 317.4 220 70.9
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 8.7e-85 317.4 220 70.9
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 8.7e-85 317.4 220 72.7
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.1e-84 317.0 217 71.0
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.1e-84 317.0 220 72.3
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 2.5e-84 315.8 226 69.0
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 3.3e-84 315.5 215 73.0
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 5.6e-84 314.7 223 71.3
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 7.4e-84 314.3 220 70.5
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 7.4e-84 314.3 264 63.6
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 7.4e-84 314.3 220 70.5
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.3e-83 313.5 218 69.3
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.1e-83 312.8 222 71.2
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 2.8e-83 312.4 220 70.5
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.1e-82 310.5 207 73.4
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.4e-82 310.1 252 64.7
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.4e-82 310.1 217 72.4
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.4e-82 310.1 249 64.7
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.4e-82 310.1 218 69.7
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.8e-82 309.7 218 68.3
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.8e-82 309.7 226 70.4
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.8e-82 309.7 222 68.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 3.1e-82 308.9 221 67.9
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 3.1e-82 308.9 221 68.3
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.3e-82 308.1 229 68.6
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 9.0e-82 307.4 215 70.2
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.2e-81 307.0 227 69.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 4.5e-81 305.1 222 67.1
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 7.6e-81 304.3 220 67.3
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 7.6e-81 304.3 220 66.4
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.0e-80 303.9 222 66.7
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.3e-80 303.5 219 69.9
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.7e-80 303.1 226 68.1
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 2.2e-80 302.8 227 67.4
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 2.2e-80 302.8 220 68.6
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 3.8e-80 302.0 219 66.2
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 3.8e-80 302.0 219 66.2
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 3.8e-80 302.0 220 67.7
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 1.9e-79 299.7 220 65.5
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 1.9e-79 299.7 220 65.5
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 3.2e-79 298.9 223 69.5
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 4.2e-79 298.5 222 66.7
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 7.1e-79 297.7 220 67.3
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 9.3e-79 297.4 222 65.8
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 2.7e-78 295.8 215 69.3
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 3.5e-78 295.4 211 71.1
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 7.9e-78 294.3 225 65.3
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 7.9e-78 294.3 235 64.3
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.0e-77 293.9 218 68.8
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.3e-77 293.5 228 65.8
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 3.9e-77 292.0 222 64.0
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 3.9e-77 292.0 259 60.2
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.9e-76 289.7 232 62.5
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 3.3e-76 288.9 222 66.7
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 4.3e-76 288.5 219 66.7
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 7.4e-76 287.7 181 75.1
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 9.6e-76 287.3 218 64.2
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.3e-75 287.0 245 61.2
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 2.8e-75 285.8 221 64.7
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 3.7e-75 285.4 161 83.2
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 6.3e-75 284.6 225 64.9
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 4.1e-74 282.0 221 62.9
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.5e-73 280.0 219 62.1
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 2.6e-73 279.3 218 64.7
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 7.6e-73 277.7 215 67.4
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.9e-71 273.1 211 65.9
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.2e-71 271.2 221 65.2
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.2e-70 270.4 161 78.9
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 3.6e-70 268.9 222 64.0
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 5.1e-69 265.0 186 73.7
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.8e-61 240.0 191 63.9
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 2.0e-60 236.5 232 53.0
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 5.9e-57 224.9 217 53.9
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 7.7e-57 224.6 123 83.7
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 3.2e-55 219.2 132 74.2
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.2e-54 217.2 225 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 5.7e-52 208.4 247 50.2
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 6.3e-51 204.9 209 53.1
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 3.1e-50 202.6 116 81.0
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 3.8e-48 195.7 236 46.2
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-44 183.7 172 56.4
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.2e-38 164.1 100 76.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 2.3e-37 159.8 251 39.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 2.7e-33 146.4 182 47.3
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 3.7e-27 125.9 248 36.7
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.1e-14 83.6 43 88.4
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 3.2e-10 69.7 38 81.6
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 2.7e-09 66.6 86 45.3
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 3.5e-09 66.2 38 76.3
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.9e-08 62.8 43 62.8
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 6.6e-08 62.0 214 27.6
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 8.1e-06 55.1 37 73.0


User provided reference genes

Program Settings