Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004840 Simmondsia chinensis HOM05D002870 ORTHO05D003241 1.7e-54 215.7 102 100.0
Sed0023606 Sechium edule HOM05D002870 ORTHO05D003241 2.7e-12 75.5 86 45.3
Eucgr.D00278 Eucalyptus grandis HOM05D002870 ORTHO05D003241 1.3e-11 73.2 86 45.3
Lsat_1_v5_gn_9_103381 Lactuca sativa HOM05D002870 ORTHO05D003241 3.9e-11 71.6 40 77.5
VMungo1309G2492 Vigna mungo HOM05D002870 ORTHO05D003241 3.9e-11 71.6 40 75.0
CDE07G2073 Ceratophyllum demersum HOM05D002870 ORTHO05D003241 5.0e-11 71.2 89 44.9
Phvul.009G215600 Phaseolus vulgaris HOM05D002870 ORTHO05D003241 5.0e-11 71.2 40 75.0
Cpa.g.sc17.32 Carica papaya HOM05D002870 ORTHO05D003241 6.6e-11 70.9 40 72.5
Os03g0733800 Oryza sativa ssp. japonica HOM05D002870 ORTHO05D003241 6.6e-11 70.9 40 77.5
Psat1g019840 Pisum sativum HOM05D002870 ORTHO05D003241 8.6e-11 70.5 86 44.2
arahy.Tifrunner.gnm1.ann1.TYZ9EK Arachis hypogaea HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
arahy.Tifrunner.gnm1.ann1.X554XP Arachis hypogaea HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Ca_24490_v3 Cicer arietinum L. HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
ClCG01G024790 Citrullus lanatus HOM05D002870 ORTHO05D003241 1.1e-10 70.1 86 44.2
Duzib235G0832 Durio zibethinus HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Glyma.09G086800 Glycine max HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Glyma.15G194900 Glycine max HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Gohir.A05G146900 Gossypium hirsutum HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Gohir.A06G139100 Gossypium hirsutum HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Gohir.D05G149400 Gossypium hirsutum HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Gorai.009G153400 Gossypium raimondii HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Gorai.010G167600 Gossypium raimondii HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Lj6g0013815 Lotus japonicus HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Lalb_Chr11g0073351 Lupinus albus HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Nn3g20427 Nelumbo nucifera HOM05D002870 ORTHO05D003241 1.1e-10 70.1 40 72.5
Lsat_1_v5_gn_7_99481 Lactuca sativa HOM05D002870 ORTHO05D003241 1.5e-10 69.7 40 75.0
vmacro12028 Vaccinium macrocarpon HOM05D002870 ORTHO05D003241 1.5e-10 69.7 40 75.0
GSVIVG01021532001 Vitis vinifera HOM05D002870 ORTHO05D003241 1.5e-10 69.7 40 77.5
Ah.06g187400 Amaranthus hybridus HOM05D002870 ORTHO05D003241 1.9e-10 69.3 40 75.0
Cpa.g.sc229.6 Carica papaya HOM05D002870 ORTHO05D003241 1.9e-10 69.3 40 75.0
CDE06G0487 Ceratophyllum demersum HOM05D002870 ORTHO05D003241 1.9e-10 69.3 89 43.8
Sc03g0007830 Simmondsia chinensis HOM05D002870 ORTHO05D003241 1.9e-10 69.3 40 75.0
MSTRG.12854 Avicennia marina HOM05D002870 ORTHO05D003241 2.5e-10 68.9 40 72.5
EL10Ac4g08526 Beta vulgaris HOM05D002870 ORTHO05D003241 2.5e-10 68.9 40 75.0
Gohir.D06G143800 Gossypium hirsutum HOM05D002870 ORTHO05D003241 2.5e-10 68.9 40 72.5
THA.LOC104812866 Tarenaya hassleriana HOM05D002870 ORTHO05D003241 2.5e-10 68.9 40 72.5
HPP92_018505 Vanilla planifolia HOM05D002870 ORTHO05D003241 2.5e-10 68.9 40 70.0
CANSAT35G1212 Cannabis sativa HOM05D002870 ORTHO05D003241 3.3e-10 68.6 40 72.5
Haze_05638 Corylus avellana HOM05D002870 ORTHO05D003241 3.3e-10 68.6 40 70.0
Nitab4.5_0001612g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 3.3e-10 68.6 40 75.0
Nitab4.5_0004166g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 3.3e-10 68.6 40 75.0
CSS0034829 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 4.3e-10 68.2 40 72.5
MELO3C007116.2 Cucumis melo HOM05D002870 ORTHO05D003241 4.3e-10 68.2 86 43.0
CsaV3_6G051910 Cucumis sativus L. HOM05D002870 ORTHO05D003241 4.3e-10 68.2 86 43.0
Rhsim06G0183700 Rhododendron simsii HOM05D002870 ORTHO05D003241 4.3e-10 68.2 40 72.5
Rhsim13G0116600 Rhododendron simsii HOM05D002870 ORTHO05D003241 4.3e-10 68.2 40 72.5
Thecc.06G146800 Theobroma cacao HOM05D002870 ORTHO05D003241 4.3e-10 68.2 40 70.0
Zm00001eb056320 Zea mays HOM05D002870 ORTHO05D003241 4.3e-10 68.2 40 72.5
ATR0665G063 Amborella trichopoda HOM05D002870 ORTHO05D003241 5.6e-10 67.8 40 72.5
MBI03_g18945_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 5.6e-10 67.8 40 70.0
Medtr2g048900 Medicago truncatula HOM05D002870 ORTHO05D003241 5.6e-10 67.8 40 70.0
SalBow7G3978 Salvia bowleyana HOM05D002870 ORTHO05D003241 5.6e-10 67.8 40 72.5
SalBow7G4695 Salvia bowleyana HOM05D002870 ORTHO05D003241 5.6e-10 67.8 40 72.5
Aa31LG4G2640 Aethionema arabicum HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 67.5
MSTRG.14781 Avicennia marina HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 72.5
CSS0048151 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 72.5
Ca_02563_v3 Cicer arietinum L. HOM05D002870 ORTHO05D003241 7.3e-10 67.4 86 44.2
Dinv21345 Davidia involucrata HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 70.0
Migut.H02060 Erythranthe guttata HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 72.5
Lj1g0022756 Lotus japonicus HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 70.0
Lalb_Chr08g0233281 Lupinus albus HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 70.0
Nitab4.5_0001594g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 72.5
Peaxi162Scf00045g02438 Petunia axillaris HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 72.5
PGR083G1793 Punica granatum HOM05D002870 ORTHO05D003241 7.3e-10 67.4 86 44.2
TPR.G40100 Trifolium pratense HOM05D002870 ORTHO05D003241 7.3e-10 67.4 40 70.0
DCAR_021067 Daucus carota HOM05D002870 ORTHO05D003241 9.5e-10 67.0 40 72.5
DCAR_021069 Daucus carota HOM05D002870 ORTHO05D003241 9.5e-10 67.0 40 72.5
MBI16_g18970_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 9.5e-10 67.0 40 70.0
SGA_v2.0_scaffold51G18638 Striga asiatica HOM05D002870 ORTHO05D003241 9.5e-10 67.0 40 72.5
TWI09G1176 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 9.5e-10 67.0 40 72.5
TWI53G0974 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 9.5e-10 67.0 40 72.5
HPP92_015880 Vanilla planifolia HOM05D002870 ORTHO05D003241 9.5e-10 67.0 40 70.0
Ciclev10015325m.g Citrus clementina HOM05D002870 ORTHO05D003241 1.2e-09 66.6 40 70.0
COL.COLO4_31032 Corchorus olitorius HOM05D002870 ORTHO05D003241 1.2e-09 66.6 40 70.0
FAN16G0159 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.2e-09 66.6 88 44.3
FAN16G0642 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.2e-09 66.6 88 44.3
Lj1C805G10 Lonicera japonica HOM05D002870 ORTHO05D003241 1.2e-09 66.6 40 67.5
MD05G1280900 Malus domestica HOM05D002870 ORTHO05D003241 1.2e-09 66.6 40 70.0
MD10G1259300 Malus domestica HOM05D002870 ORTHO05D003241 1.2e-09 66.6 40 70.0
Potri.011G139900 Populus trichocarpa HOM05D002870 ORTHO05D003241 1.2e-09 66.6 40 72.5
Sed0003019 Sechium edule HOM05D002870 ORTHO05D003241 1.2e-09 66.6 86 41.9
SEGI_24613 Sequoiadendron giganteum HOM05D002870 ORTHO05D003241 1.2e-09 66.6 40 70.0
SGA_v2.0_scaffold130G34240 Striga asiatica HOM05D002870 ORTHO05D003241 1.2e-09 66.6 86 43.0
AT2G38960 Arabidopsis thaliana HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 70.0
EL10Ac3g06812 Beta vulgaris HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 72.5
CAN.G585.1 Capsicum annuum HOM05D002870 ORTHO05D003241 1.6e-09 66.2 86 45.3
AUR62013963 Chenopodium quinoa HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 72.5
FvH4_3g05200 Fragaria vesca HOM05D002870 ORTHO05D003241 1.6e-09 66.2 88 44.3
FAN11G2808 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.6e-09 66.2 88 44.3
FAN21G1493 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.6e-09 66.2 88 44.3
FAN25G3158 Fragaria x ananassa HOM05D002870 ORTHO05D003241 1.6e-09 66.2 88 44.3
Prupe.4G084000 Prunus persica HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 70.0
RcHm_v2.0_Chr5g0014551 Rosa chinensis HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 70.0
Hund21550 Selenicereus undatus HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 67.5
Solyc07g056390.4 Solanum lycopersicum HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 72.5
Sopen07g029760 Solanum pennellii HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 72.5
PGSC0003DMG400031102 Solanum tuberosum HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 72.5
TAR627G0985 Trochodendron aralioides HOM05D002870 ORTHO05D003241 1.6e-09 66.2 40 70.0
AUR62019652 Chenopodium quinoa HOM05D002870 ORTHO05D003241 2.1e-09 65.9 40 72.5
DCAR_017560 Daucus carota HOM05D002870 ORTHO05D003241 2.1e-09 65.9 40 72.5
Manes.15G124100 Manihot esculenta HOM05D002870 ORTHO05D003241 2.1e-09 65.9 40 70.0
PSO541G4247 Papaver somniferum HOM05D002870 ORTHO05D003241 2.1e-09 65.9 40 70.0
PSO675G5265 Papaver somniferum HOM05D002870 ORTHO05D003241 2.1e-09 65.9 40 70.0
Peaxi162Scf00111g00628 Petunia axillaris HOM05D002870 ORTHO05D003241 2.1e-09 65.9 40 72.5
QL05p055495 Quercus lobata HOM05D002870 ORTHO05D003241 2.1e-09 65.9 40 67.5
Actinidia12331 Actinidia chinensis HOM05D002870 ORTHO05D003241 2.8e-09 65.5 40 70.0
Aa31LG5G20640 Aethionema arabicum HOM05D002870 ORTHO05D003241 2.8e-09 65.5 40 70.0
Aa31LG5G20700 Aethionema arabicum HOM05D002870 ORTHO05D003241 2.8e-09 65.5 40 70.0
Cc05_g10040 Coffea canephora HOM05D002870 ORTHO05D003241 2.8e-09 65.5 40 70.0
Migut.H01352 Erythranthe guttata HOM05D002870 ORTHO05D003241 2.8e-09 65.5 40 72.5
Lalb_Chr19g0133501 Lupinus albus HOM05D002870 ORTHO05D003241 2.8e-09 65.5 40 67.5
RcHm_v2.0_Chr5g0027251 Rosa chinensis HOM05D002870 ORTHO05D003241 2.8e-09 65.5 40 70.0
Actinidia20595 Actinidia chinensis HOM05D002870 ORTHO05D003241 3.6e-09 65.1 40 67.5
Carub.0004s2099 Capsella rubella HOM05D002870 ORTHO05D003241 3.6e-09 65.1 40 67.5
Cfa000918 Carpinus fangiana HOM05D002870 ORTHO05D003241 3.6e-09 65.1 40 67.5
CiPaw.09G121100 Carya illinoinensis HOM05D002870 ORTHO05D003241 3.6e-09 65.1 40 67.5
Dinv26639 Davidia involucrata HOM05D002870 ORTHO05D003241 3.6e-09 65.1 40 70.0
Thhalv10016606m.g Eutrema salsugineum HOM05D002870 ORTHO05D003241 3.6e-09 65.1 40 67.5
ECA240G4166 Erigeron canadensis HOM05D002870 ORTHO05D003241 4.7e-09 64.7 40 70.0
HanXRQChr11g0330001 Helianthus annuus HOM05D002870 ORTHO05D003241 4.7e-09 64.7 40 70.0
HanXRQChr13g0389791 Helianthus annuus HOM05D002870 ORTHO05D003241 4.7e-09 64.7 40 70.0
Oeu031301.1 Olea europaea HOM05D002870 ORTHO05D003241 4.7e-09 64.7 40 70.0
THA.LOC104812282 Tarenaya hassleriana HOM05D002870 ORTHO05D003241 4.7e-09 64.7 40 67.5
GSVIVG01020501001 Vitis vinifera HOM05D002870 ORTHO05D003241 4.7e-09 64.7 86 40.7
AL4G36270 Arabidopsis lyrata HOM05D002870 ORTHO05D003241 6.2e-09 64.3 40 70.0
CARHR133700 Cardamine hirsuta HOM05D002870 ORTHO05D003241 6.2e-09 64.3 40 67.5
RcHm_v2.0_Chr5g0027151 Rosa chinensis HOM05D002870 ORTHO05D003241 6.2e-09 64.3 40 70.0
SEGI_07160 Sequoiadendron giganteum HOM05D002870 ORTHO05D003241 6.2e-09 64.3 40 67.5
CSS0027530 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 8.0e-09 63.9 40 65.0
CARHR065120 Cardamine hirsuta HOM05D002870 ORTHO05D003241 8.0e-09 63.9 40 65.0
Sabra11G0126000 Salix brachista HOM05D002870 ORTHO05D003241 8.0e-09 63.9 40 70.0
DCAR_027899 Daucus carota HOM05D002870 ORTHO05D003241 1.1e-08 63.5 40 67.5
Nitab4.5_0009731g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 1.1e-08 63.5 41 70.7
Aqoxy1G01676 Aquilegia oxysepala HOM05D002870 ORTHO05D003241 1.4e-08 63.2 40 70.0
Duzib192G0466 Durio zibethinus HOM05D002870 ORTHO05D003241 1.4e-08 63.2 40 65.0
Lj1A1170T29 Lonicera japonica HOM05D002870 ORTHO05D003241 1.4e-08 63.2 89 41.6
SMO118G0076 Selaginella moellendorffii HOM05D002870 ORTHO05D003241 1.4e-08 63.2 40 67.5
AagrBONN_evm.TU.Sc2ySwM_340.181 Anthoceros agrestis HOM05D002870 ORTHO05D003241 1.8e-08 62.8 40 70.0
AagrBONN_evm.TU.Sc2ySwM_344.1103 Anthoceros agrestis HOM05D002870 ORTHO05D003241 1.8e-08 62.8 40 70.0
BcaB02g09170 Brassica carinata HOM05D002870 ORTHO05D003241 1.8e-08 62.8 40 67.5
Manes.17G073100 Manihot esculenta HOM05D002870 ORTHO05D003241 1.8e-08 62.8 40 65.0
Mapoly0142s0031 Marchantia polymorpha HOM05D002870 ORTHO05D003241 1.8e-08 62.8 40 65.0
Atru.chr10.1158 Acer truncatum HOM05D002870 ORTHO05D003241 2.3e-08 62.4 40 67.5
CiPaw.10G089800 Carya illinoinensis HOM05D002870 ORTHO05D003241 2.3e-08 62.4 40 65.0
ECA236G1108 Erigeron canadensis HOM05D002870 ORTHO05D003241 2.3e-08 62.4 40 65.0
Sp4g21330 Schrenkiella parvula HOM05D002870 ORTHO05D003241 2.3e-08 62.4 40 65.0
AL2G31950 Arabidopsis lyrata HOM05D002870 ORTHO05D003241 3.1e-08 62.0 40 62.5
Ciclev10019948m.g Citrus clementina HOM05D002870 ORTHO05D003241 3.1e-08 62.0 40 67.5
Eucgr.F03193 Eucalyptus grandis HOM05D002870 ORTHO05D003241 3.1e-08 62.0 40 67.5
Thhalv10018491m.g Eutrema salsugineum HOM05D002870 ORTHO05D003241 3.1e-08 62.0 40 62.5
Hma1.2p1_0198F.1_g085490 Hydrangea macrophylla HOM05D002870 ORTHO05D003241 3.1e-08 62.0 40 67.5
Dinv21534 Davidia involucrata HOM05D002870 ORTHO05D003241 4.0e-08 61.6 40 67.5
Sabra16G0290200 Salix brachista HOM05D002870 ORTHO05D003241 4.0e-08 61.6 40 65.0
Hund10319 Selenicereus undatus HOM05D002870 ORTHO05D003241 4.0e-08 61.6 49 63.3
Atru.chr2.1829 Acer truncatum HOM05D002870 ORTHO05D003241 5.2e-08 61.2 40 67.5
TPR.G17978 Trifolium pratense HOM05D002870 ORTHO05D003241 5.2e-08 61.2 40 62.5
TPR.G32055 Trifolium pratense HOM05D002870 ORTHO05D003241 5.2e-08 61.2 40 62.5
AT1G72280 Arabidopsis thaliana HOM05D002870 ORTHO05D003241 8.9e-08 60.5 40 60.0
BcaC08g46674 Brassica carinata HOM05D002870 ORTHO05D003241 8.9e-08 60.5 40 60.0
unitig_21.g20643 Utricularia gibba HOM05D002870 ORTHO05D003241 8.9e-08 60.5 40 65.0
unitig_744.g24131 Utricularia gibba HOM05D002870 ORTHO05D003241 8.9e-08 60.5 88 37.5
Actinidia01571 Actinidia chinensis HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
BcaB03g14971 Brassica carinata HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 62.5
BcaC02g12013 Brassica carinata HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
A05p07240 Brassica napus HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
C04p08700 Brassica napus HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
C06p46490 Brassica napus HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 60.0
BolC4t22462H Brassica oleracea HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
BolC6t39695H Brassica oleracea HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 60.0
BraA05t19689Z Brassica rapa HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
CANSAT56G1661 Cannabis sativa HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
CANSAT56G2737 Cannabis sativa HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
Prupe.4G145500 Prunus persica HOM05D002870 ORTHO05D003241 1.2e-07 60.1 40 65.0
A07p38400 Brassica napus HOM05D002870 ORTHO05D003241 2.0e-07 59.3 40 60.0
BraA07t31401Z Brassica rapa HOM05D002870 ORTHO05D003241 2.0e-07 59.3 40 60.0
Potri.001G436100 Populus trichocarpa HOM05D002870 ORTHO05D003241 2.6e-07 58.9 40 62.5
Sabra16G0291300 Salix brachista HOM05D002870 ORTHO05D003241 2.6e-07 58.9 40 62.5
Pp3c5_8550 Physcomitrium patens HOM05D002870 ORTHO05D003241 3.4e-07 58.5 40 60.0
Prupe.4G145200 Prunus persica HOM05D002870 ORTHO05D003241 3.4e-07 58.5 41 61.0
SalBow6G5801 Salvia bowleyana HOM05D002870 ORTHO05D003241 3.4e-07 58.5 41 65.9
Sp5g27350 Schrenkiella parvula HOM05D002870 ORTHO05D003241 3.4e-07 58.5 41 61.0
Carub.0002s1908 Capsella rubella HOM05D002870 ORTHO05D003241 5.8e-07 57.8 41 61.0
TPR.G35985 Trifolium pratense HOM05D002870 ORTHO05D003241 1.3e-06 56.6 40 60.0
Pp3c16_14150 Physcomitrium patens HOM05D002870 ORTHO05D003241 1.7e-06 56.2 40 60.0
RcHm_v2.0_Chr5g0027161 Rosa chinensis HOM05D002870 ORTHO05D003241 3.7e-06 55.1 41 61.0


User provided reference genes

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