Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 4.1e-114 414.8 225 100.0
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 5.8e-76 288.1 192 82.3
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 2.4e-74 282.7 185 83.2
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 4.1e-74 282.0 203 74.4
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 1.2e-73 280.4 181 75.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.1e-73 279.6 183 73.8
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 4.6e-73 278.5 217 66.4
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 7.8e-73 277.7 206 75.2
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 1.3e-72 276.9 206 66.5
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 1.3e-72 276.9 198 69.2
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 1.7e-72 276.6 195 70.3
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 3.0e-72 275.8 185 76.2
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 3.0e-72 275.8 196 76.5
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 5.1e-72 275.0 196 70.4
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 5.1e-72 275.0 185 78.4
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 6.6e-72 274.6 209 67.0
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 6.6e-72 274.6 179 75.4
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 8.6e-72 274.2 220 64.5
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 8.6e-72 274.2 193 71.5
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.5e-71 273.5 188 74.5
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 3.3e-71 272.3 204 69.1
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 3.3e-71 272.3 213 73.7
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 3.3e-71 272.3 205 67.8
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 4.3e-71 271.9 190 70.5
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 5.6e-71 271.6 207 70.5
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 9.6e-71 270.8 183 82.5
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 9.6e-71 270.8 201 71.1
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 9.6e-71 270.8 192 80.2
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.2e-70 270.4 204 67.6
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.2e-70 270.4 207 69.1
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.6e-70 270.0 188 74.5
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.6e-70 270.0 192 73.4
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.6e-70 270.0 191 79.1
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 2.1e-70 269.6 198 69.2
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 2.8e-70 269.2 211 65.9
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 2.8e-70 269.2 223 62.3
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 3.6e-70 268.9 209 75.1
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 8.1e-70 267.7 198 68.2
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 8.1e-70 267.7 185 71.4
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 8.1e-70 267.7 193 77.7
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.8e-69 266.5 205 72.7
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.8e-69 266.5 198 68.2
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.8e-69 266.5 212 62.7
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.1e-69 265.8 213 65.7
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 4.0e-69 265.4 185 77.8
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.0e-69 265.4 204 66.2
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.0e-69 265.4 194 67.5
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 4.0e-69 265.4 186 76.3
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 4.0e-69 265.4 208 65.9
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 4.0e-69 265.4 206 70.4
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 5.2e-69 265.0 187 78.1
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 6.8e-69 264.6 186 80.6
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 1.2e-68 263.8 212 62.3
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 1.5e-68 263.5 198 67.7
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.5e-68 263.5 185 79.5
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 2.0e-68 263.1 193 74.1
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 3.4e-68 262.3 185 69.7
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.6e-68 261.2 192 68.2
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.2e-67 259.6 171 83.6
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 2.2e-67 259.6 209 66.5
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 2.9e-67 259.2 205 64.4
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 2.9e-67 259.2 186 78.5
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 2.9e-67 259.2 184 76.1
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 3.8e-67 258.8 182 78.0
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 6.4e-67 258.1 206 70.4
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 8.4e-67 257.7 201 64.2
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.1e-66 257.3 187 77.0
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.2e-66 255.4 201 65.7
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 5.4e-66 255.0 182 70.9
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 7.1e-66 254.6 160 86.2
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.6e-65 253.4 196 73.0
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.6e-65 253.4 204 73.0
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 1.6e-65 253.4 192 74.5
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.1e-65 253.1 206 65.0
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 2.7e-65 252.7 204 73.0
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 2.7e-65 252.7 206 65.0
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 3.5e-65 252.3 198 72.7
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 6.0e-65 251.5 206 65.0
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 1.0e-64 250.8 204 71.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.0e-64 250.8 215 70.7
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 1.0e-64 250.8 204 71.6
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.0e-64 250.8 221 64.7
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 3.9e-64 248.8 204 71.1
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 8.7e-64 247.7 192 76.6
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 8.7e-64 247.7 220 58.2
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 8.7e-64 247.7 185 76.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-63 247.3 215 70.2
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.1e-63 247.3 212 70.8
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 4.3e-63 245.4 194 65.5
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 5.6e-63 245.0 205 62.4
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 9.6e-63 244.2 180 78.3
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 1.1e-61 240.7 201 71.1
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.4e-61 240.4 183 76.5
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 4.0e-61 238.8 186 66.7
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 9.0e-61 237.7 187 75.4
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 5.8e-60 235.0 179 65.9
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 9.9e-60 234.2 187 74.3
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 3.8e-59 232.3 125 86.4
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.8e-59 232.3 125 86.4
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.2e-58 228.8 125 85.6
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 7.1e-58 228.0 129 80.6
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 1.2e-57 227.3 201 67.7
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.6e-57 226.9 125 84.0
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.3e-56 223.8 132 77.3
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.3e-56 223.8 191 67.5
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.5e-55 220.3 110 89.1
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 1.9e-55 219.9 177 63.8
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.5e-55 219.5 196 63.8
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.8e-53 213.4 218 52.3
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 4.5e-52 208.8 116 80.2
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 3.8e-51 205.7 191 66.5
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 3.8e-51 205.7 150 71.3
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 4.2e-50 202.2 115 80.9
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 7.1e-50 201.4 212 59.9
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.5e-49 199.1 158 73.4
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 8.1e-46 188.0 100 87.0
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.1e-45 187.6 91 94.5
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.4e-45 186.4 155 60.6
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 4.0e-45 185.7 110 80.9
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 3.2e-34 149.4 82 81.7
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.1e-31 141.0 196 50.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 6.3e-30 135.2 101 57.4
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 8.2e-30 134.8 120 68.3
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 3.6e-25 119.4 121 53.7
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.0e-24 117.9 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 2.2e-22 110.2 93 53.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.8e-22 109.8 209 46.9
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 6.9e-21 105.1 106 49.1
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-17 94.0 83 56.6
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 3.7e-14 82.8 100 43.0
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.0e-13 78.6 56 66.1
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.9e-10 70.5 87 44.8
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.5e-10 70.1 49 67.3
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 8.8e-08 61.6 82 61.0
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.0e-07 60.5 87 46.0
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 5.7e-07 58.9 83 43.4
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 8.2e-06 55.1 34 70.6


User provided reference genes

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