Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 9.6e-124 446.8 223 100.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 2.2e-91 339.3 214 76.2
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.9e-87 326.2 217 75.6
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 7.2e-87 324.3 214 73.4
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.2e-86 323.6 219 71.7
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.6e-86 323.2 219 70.3
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 2.1e-86 322.8 219 72.1
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 6.1e-86 321.2 213 72.3
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.4e-85 320.1 214 72.4
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.8e-85 319.7 213 72.3
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.0e-85 318.9 213 73.2
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 3.0e-85 318.9 213 73.2
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.2e-84 317.0 218 71.1
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.7e-84 314.7 218 70.6
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 7.5e-84 314.3 217 70.0
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 7.5e-84 314.3 217 71.4
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.3e-83 313.5 225 66.7
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 3.7e-83 312.0 223 68.2
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 6.3e-83 311.2 220 68.2
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 6.3e-83 311.2 214 69.6
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 6.3e-83 311.2 218 70.6
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 6.3e-83 311.2 218 70.6
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 8.3e-83 310.8 217 69.1
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.4e-82 310.1 214 72.0
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.4e-82 309.3 221 69.7
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.1e-82 308.9 214 70.6
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.1e-82 308.9 218 68.8
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 9.1e-82 307.4 215 69.3
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.2e-81 307.0 225 68.0
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 4.5e-81 305.1 219 68.0
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 5.9e-81 304.7 213 69.0
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.3e-80 303.5 220 69.1
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 5.0e-80 301.6 218 67.4
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 5.0e-80 301.6 217 66.4
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 5.0e-80 301.6 204 71.6
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 8.5e-80 300.8 218 67.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 8.5e-80 300.8 221 67.0
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.9e-79 299.7 216 64.4
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.5e-79 299.3 218 66.5
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 2.5e-79 299.3 213 69.0
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 4.2e-79 298.5 220 66.8
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 5.5e-79 298.1 213 69.0
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 5.5e-79 298.1 210 69.5
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 7.2e-79 297.7 213 69.0
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 9.4e-79 297.4 220 66.8
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 9.4e-79 297.4 220 66.4
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 2.1e-78 296.2 219 66.7
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 2.1e-78 296.2 220 66.8
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 2.1e-78 296.2 220 66.8
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 2.1e-78 296.2 216 63.4
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.1e-78 296.2 216 64.4
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 2.1e-78 296.2 222 66.2
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 2.7e-78 295.8 220 65.9
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 3.6e-78 295.4 218 66.1
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 6.1e-78 294.7 204 68.6
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.0e-77 293.9 219 64.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.0e-77 293.9 213 65.7
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.0e-77 293.9 213 66.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.3e-77 292.7 196 73.5
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.3e-77 292.7 213 64.3
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.3e-77 292.7 213 67.6
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 3.0e-77 292.4 213 65.7
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.0e-77 292.0 213 65.7
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 4.0e-77 292.0 213 65.7
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 4.0e-77 292.0 218 64.7
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 8.8e-77 290.8 218 64.2
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 1.5e-76 290.0 218 63.8
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 2.6e-76 289.3 216 64.8
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 4.4e-76 288.5 205 65.4
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 4.4e-76 288.5 216 65.3
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 5.7e-76 288.1 211 63.0
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 9.8e-76 287.3 215 63.7
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 3.7e-75 285.4 216 64.8
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 4.9e-75 285.0 216 63.4
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.1e-74 283.9 221 62.9
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.4e-74 283.5 214 64.0
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.8e-74 283.1 219 62.1
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 1.8e-74 283.1 221 60.2
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 1.8e-74 283.1 221 60.2
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.1e-74 282.3 275 54.9
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 4.1e-74 282.0 217 64.1
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 4.1e-74 282.0 217 62.2
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 4.1e-74 282.0 213 64.8
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 5.4e-74 281.6 216 62.0
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 1.2e-73 280.4 217 61.8
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.6e-73 280.0 218 62.8
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.0e-73 279.6 219 60.7
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 2.7e-73 279.3 216 61.6
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 5.9e-73 278.1 213 62.4
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.7e-72 276.6 217 60.8
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 2.9e-72 275.8 220 61.4
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.9e-71 273.1 204 65.2
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 1.6e-70 270.0 219 61.6
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 3.6e-70 268.9 217 61.8
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 6.1e-70 268.1 210 61.0
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 6.1e-70 268.1 170 74.7
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 6.8e-69 264.6 185 69.2
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 6.8e-69 264.6 175 76.0
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 6.8e-69 264.6 204 62.3
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.2e-68 263.8 204 62.3
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 3.4e-68 262.3 171 72.5
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 2.2e-67 259.6 209 58.9
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 3.7e-67 258.8 193 64.8
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 8.3e-67 257.7 178 70.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.8e-66 256.5 173 72.3
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 4.6e-65 251.9 196 62.2
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.6e-65 251.9 165 75.2
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 7.8e-65 251.1 219 59.8
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.7e-64 250.0 207 58.9
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.7e-64 250.0 215 56.3
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.9e-64 248.8 207 58.5
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 6.6e-64 248.1 208 57.7
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 5.6e-63 245.0 219 59.4
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.2e-62 243.8 147 80.3
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-62 243.8 205 56.6
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.1e-62 243.0 205 56.1
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.8e-62 242.7 220 55.5
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.8e-62 242.7 208 55.3
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 8.0e-62 241.1 146 79.5
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.4e-60 235.7 168 66.7
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.4e-58 230.3 217 52.1
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 4.6e-57 225.3 156 69.2
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 4.3e-55 218.8 214 49.5
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.2e-54 217.2 155 71.6
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.6e-54 216.9 204 55.9
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 6.2e-54 214.9 217 54.8
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 5.2e-53 211.8 207 51.2
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 1.3e-51 207.2 215 54.9
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 2.2e-51 206.5 216 51.4
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.7e-51 205.7 215 51.6
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 3.5e-49 199.1 206 50.0
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.6e-49 198.7 202 47.0
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 1.7e-48 196.8 198 48.0
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 7.6e-44 181.4 147 55.1
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 2.2e-43 179.9 214 43.5
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 2.9e-43 179.5 216 47.2
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.1e-42 177.6 217 46.5
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 2.4e-42 176.4 172 50.6
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.5e-41 172.6 213 47.4
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 1.7e-40 170.2 204 41.7
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.6e-38 163.7 160 53.8
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.1e-37 161.0 222 41.0
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 1.1e-37 161.0 103 79.6
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.9e-37 158.3 123 66.7
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 5.4e-34 148.7 205 40.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 4.6e-33 145.6 205 39.5
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 6.6e-32 141.7 91 74.7
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.1e-29 134.4 96 66.7
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 8.4e-27 124.8 179 45.8
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 1.9e-26 123.6 129 48.1
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.7e-25 119.8 83 68.7
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.1e-22 110.2 90 58.9
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.1e-18 97.8 82 57.3
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 6.2e-14 82.0 68 63.2
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 4.0e-13 79.3 86 48.8
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 3.4e-12 76.3 197 34.0


User provided reference genes

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