Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.1e-161 573.2 286 100.0
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 4.6e-110 401.7 258 75.6
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 9.5e-108 394.0 257 74.3
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 1.8e-106 389.8 277 70.4
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 6.8e-106 387.9 259 71.8
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 6.8e-106 387.9 258 72.1
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.0e-105 386.3 254 73.6
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 2.0e-105 386.3 254 74.4
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 7.5e-105 384.4 254 73.2
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 3.7e-104 382.1 257 72.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 3.7e-104 382.1 254 72.8
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 4.9e-104 381.7 259 72.6
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.4e-103 380.2 256 72.7
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 1.9e-103 379.8 254 72.4
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 3.2e-103 379.0 258 71.7
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 5.4e-103 378.3 257 70.8
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.1e-102 376.3 259 72.2
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 4.6e-102 375.2 257 73.2
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 6.0e-102 374.8 259 71.8
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 7.8e-102 374.4 257 70.8
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.3e-101 373.6 259 71.8
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 1.1e-100 370.5 261 70.5
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 3.3e-100 369.0 255 71.0
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 4.3e-100 368.6 257 68.5
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 1.2e-99 367.1 257 67.3
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 2.1e-99 366.3 257 68.5
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 2.8e-99 365.9 254 70.5
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 3.6e-99 365.5 254 70.5
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.3e-98 362.8 261 68.6
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 3.1e-98 362.5 257 66.5
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.2e-98 361.7 254 69.7
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.2e-97 360.5 268 66.0
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.5e-97 360.1 271 67.9
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 2.0e-97 359.8 255 69.0
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 2.0e-97 359.8 257 67.3
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.7e-96 356.7 273 65.2
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 6.4e-96 354.8 257 65.8
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 8.4e-96 354.4 254 66.9
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.1e-95 354.0 262 65.6
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 3.2e-95 352.4 257 66.1
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 4.1e-95 352.1 257 66.9
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 9.2e-95 350.9 258 66.3
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.2e-94 350.5 257 65.0
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.1e-94 349.7 254 69.3
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 2.1e-94 349.7 267 63.3
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 3.5e-94 349.0 258 65.9
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 3.5e-94 349.0 258 65.9
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 7.8e-94 347.8 253 65.2
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.7e-93 346.7 261 64.8
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 5.1e-93 345.1 254 67.7
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 5.1e-93 345.1 258 64.7
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 8.6e-93 344.4 258 65.5
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.1e-92 344.0 261 65.1
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.5e-92 343.6 255 64.3
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 1.5e-92 343.6 256 64.5
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 3.3e-92 342.4 274 62.0
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 4.3e-92 342.0 253 64.0
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 5.6e-92 341.7 238 68.9
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.6e-92 341.7 281 63.3
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 1.6e-91 340.1 254 66.9
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 3.6e-91 339.0 229 72.5
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 8.1e-91 337.8 257 65.0
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 6.8e-90 334.7 258 64.7
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 5.8e-89 331.6 255 63.1
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 7.6e-89 331.3 257 63.4
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 4.9e-88 328.6 257 63.0
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.9e-87 326.6 201 76.1
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 3.2e-87 325.9 225 71.6
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 7.1e-87 324.7 261 62.5
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 2.1e-86 323.2 325 53.5
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 6.0e-86 321.6 287 57.1
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 6.0e-86 321.6 268 59.7
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.7e-85 320.1 289 58.5
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 2.3e-85 319.7 258 62.0
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 1.5e-84 317.0 252 60.3
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 7.3e-84 314.7 259 61.4
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 7.3e-84 314.7 202 72.3
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 3.6e-83 312.4 255 60.4
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 6.2e-83 311.6 231 68.0
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.1e-82 310.8 257 59.9
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 5.8e-81 305.1 264 57.6
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.6e-81 304.7 274 58.8
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 8.4e-80 301.2 257 59.9
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 1.4e-79 300.4 205 69.3
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 1.6e-78 297.0 257 57.6
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 1.7e-77 293.5 202 70.3
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 1.8e-74 283.5 261 55.6
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.6e-73 279.6 175 74.3
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 3.7e-67 259.2 195 67.7
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 1.4e-66 257.3 266 48.1
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 9.0e-66 254.6 225 56.9
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 4.9e-64 248.8 205 60.5
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 3.9e-61 239.2 173 68.8
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.5e-60 237.3 171 67.3
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.9e-60 236.9 258 46.9
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 9.6e-60 234.6 257 49.8
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 9.6e-60 234.6 224 50.4
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 6.3e-59 231.9 192 60.9
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.8e-58 230.3 251 45.8
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 4.2e-55 219.2 185 60.5
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 5.7e-52 208.8 257 47.1
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 3.7e-51 206.1 162 62.3
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 1.4e-47 194.1 217 44.7
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 4.1e-42 176.0 124 70.2
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 5.3e-42 175.6 148 57.4
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.5e-39 165.6 96 82.3
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 9.4e-39 164.9 95 84.2
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 6.7e-37 158.7 124 58.9
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.3e-36 156.4 173 48.0
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 3.7e-35 152.9 96 79.2
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 3.5e-33 146.4 95 73.7
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 7.7e-33 145.2 94 73.4
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 2.3e-29 133.7 109 62.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 4.0e-29 132.9 212 36.3
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 5.3e-26 122.5 88 63.6
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 2.9e-24 116.7 95 64.2
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 4.2e-23 112.8 81 60.5
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 4.2e-23 112.8 68 73.5
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 7.2e-23 112.1 171 35.7
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 7.0e-18 95.5 162 34.0
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.6e-17 94.4 108 47.2
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 5.9e-17 92.4 55 74.5
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.6e-14 84.3 67 61.2
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 2.3e-13 80.5 89 48.3
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 1.2e-12 78.2 53 64.2
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 8.3e-11 72.0 70 54.3
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-10 71.6 59 61.0
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.4e-10 71.2 84 40.5
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 1.2e-09 68.2 71 50.7
AUR62037909 Chenopodium quinoa HOM05D006242 ORTHO05D007936 5.9e-09 65.9 59 50.8
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.3e-08 64.7 54 57.4


User provided reference genes

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