Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 3.3e-234 814.7 418 100.0
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 7.5e-170 600.9 373 81.0
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 9.8e-170 600.5 348 87.4
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 1.7e-169 599.7 376 82.4
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 1.7e-169 599.7 377 81.4
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 2.8e-169 599.0 376 81.9
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 4.9e-169 598.2 377 82.5
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 4.9e-169 598.2 352 85.2
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 8.3e-169 597.4 373 81.5
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 1.1e-168 597.0 349 85.7
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 1.4e-168 596.7 375 80.3
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 2.4e-168 595.9 376 82.2
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 3.1e-168 595.5 373 81.8
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 3.1e-168 595.5 373 80.7
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 5.4e-168 594.7 368 82.6
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 5.4e-168 594.7 375 81.1
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 5.4e-168 594.7 360 83.3
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 1.2e-167 593.6 365 82.7
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 1.2e-167 593.6 376 81.6
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 1.6e-167 593.2 373 80.7
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 2.0e-167 592.8 378 81.2
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.0e-167 592.8 360 83.1
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 3.5e-167 592.0 376 80.6
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 5.9e-167 591.3 373 80.7
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 5.9e-167 591.3 371 81.7
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 5.9e-167 591.3 361 82.8
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 7.7e-167 590.9 346 85.3
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 1.0e-166 590.5 378 81.5
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 1.0e-166 590.5 375 79.2
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 1.3e-166 590.1 394 77.4
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 1.7e-166 589.7 380 80.3
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 2.9e-166 589.0 358 82.7
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 3.8e-166 588.6 378 79.4
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.8e-166 588.6 378 79.1
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.8e-166 588.6 378 79.1
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.8e-166 588.6 362 82.0
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 5.0e-166 588.2 365 81.6
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 5.0e-166 588.2 388 76.5
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 8.6e-166 587.4 380 79.2
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 1.1e-165 587.0 362 81.8
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 1.5e-165 586.6 349 84.2
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 1.9e-165 586.3 361 82.3
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.9e-165 586.3 354 82.8
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.5e-165 585.9 362 81.8
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 2.5e-165 585.9 380 79.7
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.3e-165 585.5 373 80.2
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.3e-165 585.1 346 84.4
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 4.3e-165 585.1 344 85.5
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 5.6e-165 584.7 369 80.2
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 7.3e-165 584.3 374 79.7
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 9.5e-165 583.9 362 81.2
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 1.2e-164 583.6 379 77.6
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 2.1e-164 582.8 363 80.2
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 2.1e-164 582.8 374 79.4
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 2.8e-164 582.4 362 81.2
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 2.8e-164 582.4 382 78.8
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.8e-164 582.4 346 83.8
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 3.6e-164 582.0 344 84.9
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 3.6e-164 582.0 346 84.1
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 4.7e-164 581.6 363 80.4
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 4.7e-164 581.6 381 77.4
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 6.1e-164 581.3 358 81.8
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 8.0e-164 580.9 354 82.2
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 8.0e-164 580.9 344 82.8
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.4e-163 580.1 344 84.6
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 1.4e-163 580.1 381 79.3
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 2.3e-163 579.3 374 79.1
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 3.0e-163 578.9 346 84.4
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 3.0e-163 578.9 363 80.2
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 3.0e-163 578.9 363 80.4
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 3.0e-163 578.9 362 80.9
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 4.0e-163 578.6 363 79.9
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 5.2e-163 578.2 378 81.0
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 6.8e-163 577.8 373 78.3
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 6.8e-163 577.8 351 83.5
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 8.9e-163 577.4 365 79.7
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 8.9e-163 577.4 362 80.4
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 1.2e-162 577.0 365 79.7
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 1.2e-162 577.0 372 79.6
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 1.5e-162 576.6 364 79.4
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 1.5e-162 576.6 354 81.4
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 1.5e-162 576.6 354 81.4
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 2.0e-162 576.2 352 83.0
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 2.0e-162 576.2 370 79.7
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 2.6e-162 575.9 363 79.9
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 2.6e-162 575.9 363 79.9
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 2.6e-162 575.9 363 79.9
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 2.6e-162 575.9 363 79.9
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 3.4e-162 575.5 354 81.6
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 4.4e-162 575.1 362 79.8
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 5.7e-162 574.7 363 79.6
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 5.7e-162 574.7 363 78.8
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 7.5e-162 574.3 363 79.1
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 7.5e-162 574.3 385 76.1
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 1.7e-161 573.2 363 78.8
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 2.2e-161 572.8 363 78.8
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.2e-161 572.8 354 80.8
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 2.9e-161 572.4 346 82.7
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 3.7e-161 572.0 364 78.8
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 3.7e-161 572.0 349 81.9
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 8.3e-161 570.9 354 80.2
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 8.3e-161 570.9 373 78.6
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.1e-160 570.5 344 82.0
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 4.1e-160 568.5 378 75.9
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 9.2e-160 567.4 393 75.3
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 1.6e-159 566.6 382 77.0
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 3.5e-159 565.5 349 81.1
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 4.6e-159 565.1 368 78.8
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 1.7e-158 563.1 347 81.6
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 3.0e-158 562.4 379 76.0
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 7.3e-157 557.8 358 79.6
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 1.0e-155 553.9 393 74.3
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 6.8e-155 551.2 365 75.6
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 2.9e-153 545.8 374 74.3
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 6.4e-153 544.7 356 77.0
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 3.2e-152 542.3 354 76.3
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 4.1e-152 542.0 383 72.8
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 1.7e-150 536.6 346 76.9
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 3.0e-150 535.8 387 76.0
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 4.3e-149 531.9 345 77.4
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 3.4e-146 522.3 334 79.6
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 3.2e-144 515.8 352 76.1
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 2.1e-143 513.1 384 70.3
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 6.0e-143 511.5 323 79.6
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 3.3e-141 505.8 295 84.7
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 6.0e-135 485.0 294 83.0
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 4.3e-133 478.8 354 67.5
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 3.6e-132 475.7 359 68.8
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 5.4e-120 435.3 317 72.6
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 4.6e-119 432.2 307 70.7
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 4.5e-106 389.0 222 89.2
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 3.3e-85 319.7 189 86.8
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 1.8e-83 313.9 185 87.0
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 7.7e-66 255.4 186 69.9
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 8.5e-65 251.9 186 68.8
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 1.6e-50 204.5 117 84.6
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.0e-50 204.1 138 72.5
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 2.0e-50 204.1 237 53.2
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 5.9e-50 202.6 117 83.8
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 1.5e-48 198.0 177 61.0
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.3e-48 196.4 169 65.7
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.3e-48 196.4 169 65.7
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.0e-46 191.8 125 73.6
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.5e-45 188.0 121 74.4
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 1.7e-36 157.9 96 78.1
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 3.7e-36 156.8 101 79.2
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.9e-33 146.7 159 50.3
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 1.9e-32 144.4 117 69.2
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 1.6e-31 141.4 113 63.7
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 4.0e-30 136.7 78 88.5
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 5.2e-30 136.3 117 59.8
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 8.9e-30 135.6 84 81.0
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.4e-29 133.7 115 59.1
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 4.4e-29 133.3 116 58.6
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 6.4e-28 129.4 71 87.3
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 1.4e-27 128.3 88 75.0
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.9e-27 127.9 77 83.1
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 1.9e-27 127.9 67 88.1
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 7.1e-27 125.9 96 64.6
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 3.5e-26 123.6 69 85.5
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 8.6e-25 119.0 72 81.9
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 4.6e-18 96.7 81 66.7
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 2.5e-16 90.9 58 77.6
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 9.0e-14 82.4 52 76.9
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 2.6e-13 80.9 57 71.9
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 9.9e-13 79.0 350 26.0
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 4.3e-08 63.5 40 85.0


User provided reference genes

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