Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004160 Simmondsia chinensis HOM05D001197 ORTHO05D009835 8.9e-63 243.4 122 100.0
Ciclev10016768m.g Citrus clementina HOM05D001197 ORTHO05D009835 2.2e-21 105.9 120 48.3
Prupe.4G116100 Prunus persica HOM05D001197 ORTHO05D009835 2.4e-20 102.4 120 46.7
RcHm_v2.0_Chr5g0020731 Rosa chinensis HOM05D000604 ORTHO05D009835 4.2e-20 101.7 121 47.1
TAR624G1208 Trochodendron aralioides HOM05D001197 ORTHO05D009835 7.9e-19 97.4 127 46.5
Hma1.2p1_0088F.1_g045050 Hydrangea macrophylla HOM05D001197 ORTHO05D009835 1.0e-18 97.1 131 44.3
Atru.chr10.388 Acer truncatum HOM05D000604 ORTHO05D009835 1.3e-18 96.7 114 46.5
CSS0041514 Camellia sinensis var. sinensis HOM05D001197 ORTHO05D009835 1.7e-18 96.3 71 64.8
Sed0015035 Sechium edule HOM05D000604 ORTHO05D009835 2.3e-18 95.9 115 46.1
Cfa000663 Carpinus fangiana HOM05D000604 ORTHO05D009835 3.9e-18 95.1 144 43.1
Dinv31175 Davidia involucrata HOM05D001197 ORTHO05D009835 3.9e-18 95.1 129 45.0
Duzib132G1124 Durio zibethinus HOM05D000604 ORTHO05D009835 3.9e-18 95.1 139 41.0
FvH4_3g12730 Fragaria vesca HOM05D001197 ORTHO05D009835 3.9e-18 95.1 121 45.5
CsaV3_6G052810 Cucumis sativus L. HOM05D000604 ORTHO05D009835 6.6e-18 94.4 117 44.4
Nitab4.5_0000443g0150 Nicotiana tabacum HOM05D001197 ORTHO05D009835 8.7e-18 94.0 111 44.1
FAN16G1681 Fragaria x ananassa HOM05D001197 ORTHO05D009835 1.1e-17 93.6 98 52.0
Sopen02g017580 Solanum pennellii HOM05D001197 ORTHO05D009835 1.1e-17 93.6 111 43.2
Haze_06158 Corylus avellana HOM05D000604 ORTHO05D009835 1.9e-17 92.8 144 41.0
PSO675G3859 Papaver somniferum HOM05D001197 ORTHO05D009835 2.5e-17 92.4 106 47.2
Potri.003G074900 Populus trichocarpa HOM05D001197 ORTHO05D009835 3.3e-17 92.0 147 40.8
GSVIVG01012134001 Vitis vinifera HOM05D001197 ORTHO05D009835 3.3e-17 92.0 114 43.0
GSVIVG01012135001 Vitis vinifera HOM05D001197 ORTHO05D009835 3.3e-17 92.0 114 43.0
Solyc02g068440.3 Solanum lycopersicum HOM05D001197 ORTHO05D009835 4.3e-17 91.7 127 37.8
MELO3C007029.2 Cucumis melo HOM05D000604 ORTHO05D009835 7.3e-17 90.9 115 44.3
Nn7g38294 Nelumbo nucifera HOM05D001197 ORTHO05D009835 9.6e-17 90.5 110 43.6
THA.LOC104811787 Tarenaya hassleriana HOM05D000604 ORTHO05D009835 9.6e-17 90.5 140 39.3
Manes.16G052000 Manihot esculenta HOM05D000604 ORTHO05D009835 1.3e-16 90.1 138 42.0
Rhsim02G0169500 Rhododendron simsii HOM05D001197 ORTHO05D009835 1.3e-16 90.1 120 45.0
Thecc.02G005200 Theobroma cacao HOM05D000604 ORTHO05D009835 1.3e-16 90.1 140 38.6
BcaC06g30641 Brassica carinata HOM05D001197 ORTHO05D009835 1.6e-16 89.7 129 39.5
ClCG01G025560 Citrullus lanatus HOM05D000604 ORTHO05D009835 2.1e-16 89.4 115 43.5
Actinidia34691 Actinidia chinensis HOM05D001197 ORTHO05D009835 2.8e-16 89.0 118 43.2
BcaNung03488 Brassica carinata HOM05D001197 ORTHO05D009835 2.8e-16 89.0 123 39.8
BolC7t45572H Brassica oleracea HOM05D001197 ORTHO05D009835 2.8e-16 89.0 123 39.8
CiPaw.10G062200 Carya illinoinensis HOM05D000604 ORTHO05D009835 3.6e-16 88.6 136 42.6
Gohir.D01G132200 Gossypium hirsutum HOM05D000604 ORTHO05D009835 3.6e-16 88.6 112 42.9
Gorai.002G163800 Gossypium raimondii HOM05D000604 ORTHO05D009835 3.6e-16 88.6 112 42.9
Nitab4.5_0008708g0030 Nicotiana tabacum HOM05D001197 ORTHO05D009835 3.6e-16 88.6 109 42.2
Gohir.A01G141452 Gossypium hirsutum HOM05D000604 ORTHO05D009835 4.8e-16 88.2 112 42.9
MD10G1228700 Malus domestica HOM05D001197 ORTHO05D009835 6.2e-16 87.8 109 42.2
FAN11G1799 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.1e-15 87.0 74 55.4
ECA238G3853 Erigeron canadensis HOM05D001197 ORTHO05D009835 1.4e-15 86.7 112 42.9
Thhalv10026477m.g Eutrema salsugineum HOM05D001197 ORTHO05D009835 1.4e-15 86.7 108 42.6
Sp7g18490 Schrenkiella parvula HOM05D001197 ORTHO05D009835 1.4e-15 86.7 133 37.6
CARHR226820 Cardamine hirsuta HOM05D001197 ORTHO05D009835 1.8e-15 86.3 123 39.8
Cpa.g.sc30.128 Carica papaya HOM05D001197 ORTHO05D009835 1.8e-15 86.3 140 37.9
Peaxi162Scf00199g00924 Petunia axillaris HOM05D001197 ORTHO05D009835 1.8e-15 86.3 111 40.5
BcaC09g51349 Brassica carinata HOM05D001197 ORTHO05D009835 2.4e-15 85.9 108 41.7
CANSAT35G1438 Cannabis sativa HOM05D000604 ORTHO05D009835 2.4e-15 85.9 114 41.2
Lsat_1_v5_gn_2_60840 Lactuca sativa HOM05D001197 ORTHO05D009835 2.4e-15 85.9 130 40.0
QL11p012745 Quercus lobata HOM05D000604 ORTHO05D009835 3.1e-15 85.5 113 43.4
TWI38G0630 Tripterygium wilfordii HOM05D000604 ORTHO05D009835 3.1e-15 85.5 135 40.7
AL7G33830 Arabidopsis lyrata HOM05D001197 ORTHO05D009835 4.0e-15 85.1 123 39.0
HanXRQChr14g0440121 Helianthus annuus HOM05D001197 ORTHO05D009835 4.0e-15 85.1 118 41.5
Carub.0007s2110 Capsella rubella HOM05D001197 ORTHO05D009835 5.3e-15 84.7 123 39.0
AT4G20030 Arabidopsis thaliana HOM05D001197 ORTHO05D009835 6.9e-15 84.3 108 41.7
A01p11830 Brassica napus HOM05D000604 ORTHO05D009835 9.0e-15 84.0 108 41.7
C01p14030 Brassica napus HOM05D001197 ORTHO05D009835 9.0e-15 84.0 108 40.7
BolC1t01370H Brassica oleracea HOM05D001197 ORTHO05D009835 9.0e-15 84.0 108 40.7
Sabra03G0045600 Salix brachista HOM05D001197 ORTHO05D009835 2.0e-14 82.8 74 54.1
BraA01t01125Z Brassica rapa HOM05D001197 ORTHO05D009835 2.6e-14 82.4 108 40.7
PGSC0003DMG400009433 Solanum tuberosum HOM05D001197 ORTHO05D009835 2.6e-14 82.4 71 53.5
Cc09_g05400 Coffea canephora HOM05D000604 ORTHO05D009835 7.6e-14 80.9 124 37.9
Lj1C1148T2 Lonicera japonica HOM05D001197 ORTHO05D009835 1.3e-13 80.1 71 52.1
SGA_v2.0_scaffold51G18673 Striga asiatica HOM05D001197 ORTHO05D009835 2.2e-13 79.3 81 49.4
C07p50690 Brassica napus HOM05D001197 ORTHO05D009835 4.9e-13 78.2 150 32.0
CDE11G0746 Ceratophyllum demersum HOM05D000604 ORTHO05D009835 4.9e-13 78.2 109 41.3
PGR004G0073 Punica granatum HOM05D000604 ORTHO05D009835 6.4e-13 77.8 107 43.9
HPP92_016421 Vanilla planifolia HOM05D000604 ORTHO05D009835 6.4e-13 77.8 71 50.7
HPP92_026369 Vanilla planifolia HOM05D000604 ORTHO05D009835 6.4e-13 77.8 71 50.7
Lalb_Chr13g0293541 Lupinus albus HOM05D003377 ORTHO05D009835 1.9e-12 76.3 70 54.3
vmacro11010 Vaccinium macrocarpon HOM05D001197 ORTHO05D009835 2.4e-12 75.9 70 52.9
Phvul.002G189500 Phaseolus vulgaris HOM05D003377 ORTHO05D009835 3.2e-12 75.5 127 39.4
DCAR_001285 Daucus carota HOM05D001197 ORTHO05D009835 7.1e-12 74.3 70 51.4
Aa31LG6G2450 Aethionema arabicum HOM05D001197 ORTHO05D009835 9.3e-12 73.9 71 47.9
Glyma.08G087800 Glycine max HOM05D003377 ORTHO05D009835 9.3e-12 73.9 108 43.5
VMungo0251G0867 Vigna mungo HOM05D003377 ORTHO05D009835 2.1e-11 72.8 70 52.9
Lj4g0013172 Lotus japonicus HOM05D000604 ORTHO05D009835 3.5e-11 72.0 134 36.6
Eucgr.D00021 Eucalyptus grandis HOM05D003377 ORTHO05D009835 1.0e-10 70.5 55 58.2
Medtr5g071540 Medicago truncatula HOM05D000604 ORTHO05D009835 1.8e-10 69.7 109 42.2
arahy.Tifrunner.gnm1.ann1.7SD2CW Arachis hypogaea HOM05D000604 ORTHO05D009835 2.3e-10 69.3 70 50.0
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 2.3e-10 69.3 70 50.0
arahy.Tifrunner.gnm1.ann1.UNWS3C Arachis hypogaea HOM05D000604 ORTHO05D009835 2.3e-10 69.3 70 50.0
Ca_05619_v3 Cicer arietinum L. HOM05D003377 ORTHO05D009835 2.3e-10 69.3 101 44.6
TPR.G5089 Trifolium pratense HOM05D000604 ORTHO05D009835 3.0e-10 68.9 119 41.2
Glyma.05G133302 Glycine max HOM05D001197 ORTHO05D009835 1.9e-09 66.2 65 56.9
Psat2g057120 Pisum sativum HOM05D003377 ORTHO05D009835 1.6e-08 63.2 102 40.2


User provided reference genes

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