Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 1.5e-164 582.8 297 100.0
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.2e-137 493.4 295 83.4
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 7.3e-135 484.2 297 81.8
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 5.2e-133 478.0 302 81.5
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 5.8e-132 474.6 295 81.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.7e-131 473.0 298 80.9
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.2e-131 472.6 297 81.5
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.1e-130 470.3 297 80.8
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.9e-130 469.5 297 80.5
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 2.4e-130 469.2 297 80.5
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 5.4e-130 468.0 297 77.1
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 7.0e-130 467.6 297 77.4
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 7.0e-130 467.6 297 79.8
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 1.6e-129 466.5 297 78.8
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 2.0e-129 466.1 297 76.8
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.5e-129 465.3 297 79.5
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 6.0e-129 464.5 298 78.5
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 6.0e-129 464.5 298 78.5
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 7.8e-129 464.2 297 78.1
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.0e-128 463.8 297 78.5
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.3e-128 463.4 297 79.1
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.7e-128 463.0 298 77.9
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.3e-128 462.6 297 80.5
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 3.0e-128 462.2 294 79.6
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 5.0e-128 461.5 297 78.1
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 6.6e-128 461.1 297 79.1
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 8.6e-128 460.7 297 77.4
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.5e-127 459.9 297 79.5
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.5e-127 459.9 297 76.8
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.5e-127 459.9 298 78.2
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.9e-127 459.5 297 77.4
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.9e-127 459.5 297 77.1
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.3e-127 458.4 297 76.4
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 4.3e-127 458.4 297 77.8
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 5.6e-127 458.0 285 80.7
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 5.6e-127 458.0 297 78.1
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 9.5e-127 457.2 297 76.8
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 9.5e-127 457.2 297 77.1
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 9.5e-127 457.2 297 77.4
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.6e-126 456.4 297 78.1
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.6e-126 456.4 294 77.2
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 2.8e-126 455.7 297 75.8
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.6e-126 455.3 315 72.7
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 3.6e-126 455.3 297 78.1
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 4.7e-126 454.9 302 76.2
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.2e-126 454.5 315 72.1
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.1e-125 453.8 297 78.5
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.4e-125 453.4 298 76.8
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.4e-125 453.4 298 77.2
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-125 453.0 297 76.4
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.8e-125 453.0 302 75.8
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 3.1e-125 452.2 297 78.1
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 4.0e-125 451.8 297 77.1
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 5.2e-125 451.4 297 75.8
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.2e-125 451.4 315 72.7
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.2e-125 451.4 294 77.6
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.2e-125 451.4 294 77.6
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 3.4e-124 448.7 297 76.4
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 3.4e-124 448.7 341 68.9
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 5.8e-124 448.0 295 75.9
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 7.5e-124 447.6 295 75.6
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 7.5e-124 447.6 295 75.6
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.3e-123 446.8 297 76.8
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.3e-123 446.8 297 76.8
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 3.7e-123 445.3 297 75.4
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.9e-122 443.0 295 74.6
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.2e-122 442.2 282 78.7
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 7.0e-122 441.0 297 73.7
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 7.0e-122 441.0 297 74.7
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.2e-121 440.3 297 73.1
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 7.8e-121 437.6 299 74.6
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.3e-120 436.8 292 74.7
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 2.3e-120 436.0 297 74.7
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 6.6e-120 434.5 297 75.1
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 1.1e-119 433.7 277 78.7
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 2.5e-119 432.6 293 73.7
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 3.3e-119 432.2 297 72.7
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 3.3e-119 432.2 294 74.5
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 3.3e-119 432.2 297 73.4
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 4.3e-119 431.8 297 73.4
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 2.1e-118 429.5 295 73.2
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 2.8e-118 429.1 293 73.4
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.6e-118 428.7 295 73.2
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 8.1e-118 427.6 294 73.5
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 8.1e-118 427.6 294 73.8
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 2.3e-117 426.0 294 72.4
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 2.3e-117 426.0 294 73.1
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 2.3e-117 426.0 262 81.3
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.3e-117 426.0 282 75.5
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 5.2e-117 424.9 294 72.1
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 5.2e-117 424.9 289 75.1
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 6.8e-117 424.5 297 71.7
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 8.9e-117 424.1 294 72.8
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.2e-116 423.7 296 73.0
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.5e-116 423.3 294 73.1
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.5e-116 423.3 294 73.1
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 4.4e-116 421.8 294 72.8
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 4.4e-116 421.8 297 71.7
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 5.8e-116 421.4 297 71.4
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 5.8e-116 421.4 294 72.4
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.9e-115 419.1 295 72.5
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 6.4e-115 417.9 294 72.4
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 1.9e-114 416.4 281 74.0
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 3.5e-113 412.1 298 70.8
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 3.5e-113 412.1 298 70.5
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 5.6e-111 404.8 248 80.6
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 1.2e-110 403.7 294 70.7
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 4.2e-106 388.7 297 68.7
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.1e-102 376.3 226 81.9
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 2.8e-102 375.9 297 68.4
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 4.7e-102 375.2 320 63.1
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.3e-96 356.3 291 60.1
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.4e-93 346.3 294 60.5
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.5e-92 343.6 294 57.5
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 3.4e-92 342.4 249 69.9
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 2.2e-91 339.7 223 77.6
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.9e-91 339.3 294 59.2
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.9e-91 339.3 223 77.1
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 2.9e-91 339.3 290 60.0
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 6.4e-91 338.2 297 59.6
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 5.1e-88 328.6 279 62.4
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 5.6e-87 325.1 295 56.9
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 5.6e-87 325.1 223 74.9
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 3.7e-86 322.4 262 59.9
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.4e-84 315.8 286 61.2
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 9.3e-82 307.8 220 70.5
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 6.7e-72 275.0 256 54.7
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-71 273.9 231 63.6
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.9e-66 256.9 177 75.1
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 6.7e-64 248.4 148 85.1
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-63 247.7 177 70.1
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.2e-57 227.6 160 68.1
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.0e-55 220.3 203 60.1
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 4.8e-54 215.7 143 71.3
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 4.5e-52 209.1 149 69.1
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-47 193.4 133 72.2
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.3e-46 191.0 283 37.1
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 4.2e-42 176.0 144 63.9
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 1.1e-37 161.4 182 52.2
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 1.2e-36 157.9 107 77.6
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 2.9e-35 153.3 302 34.8
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 4.0e-32 142.9 132 61.4
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.5e-31 141.0 107 71.0
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 3.4e-31 139.8 97 69.1
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 1.0e-24 118.2 270 28.9
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-24 115.9 116 56.9
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 2.8e-22 110.2 64 84.4
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 4.9e-22 109.4 81 65.4
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 3.5e-20 103.2 128 49.2
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-15 87.8 106 48.1
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-14 84.3 106 47.2
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 6.6e-11 72.4 91 46.2
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.6e-09 67.8 45 68.9
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 3.1e-08 63.5 39 74.4
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 5.8e-07 59.3 54 55.6
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 1.7e-06 57.8 59 52.5
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.9e-06 57.0 54 53.7
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.9e-06 57.0 54 53.7
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 8.3e-06 55.5 31 74.2


User provided reference genes

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