Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 5.5e-251 870.5 457 100.0
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 8.6e-119 431.4 565 48.3
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 3.3e-118 429.5 535 49.9
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 7.3e-118 428.3 462 51.9
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 3.7e-114 416.0 451 53.0
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.4e-113 414.1 483 52.6
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 4.1e-113 412.5 570 46.3
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 1.7e-111 407.1 525 48.8
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 2.5e-110 403.3 428 52.8
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 1.6e-109 400.6 442 53.6
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 2.1e-109 400.2 470 49.6
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.6e-109 399.4 466 50.2
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 1.1e-108 397.9 589 43.8
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.1e-108 397.9 465 50.3
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 4.0e-108 396.0 426 53.5
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.5e-107 394.0 457 50.5
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 3.4e-107 392.9 445 51.7
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.4e-107 392.9 421 52.3
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 2.2e-106 390.2 467 49.5
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.4e-105 387.5 584 43.3
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.9e-105 387.1 459 51.2
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 4.1e-105 386.0 464 50.0
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 7.1e-105 385.2 472 49.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 9.2e-105 384.8 446 50.9
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 9.2e-105 384.8 475 47.6
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 2.1e-104 383.6 486 48.4
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 1.0e-103 381.3 450 51.1
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.3e-103 380.9 465 50.5
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 1.7e-103 380.6 432 50.2
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 2.3e-103 380.2 351 55.3
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 3.0e-103 379.8 468 48.7
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 3.9e-103 379.4 436 51.4
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.5e-102 377.5 425 49.9
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 3.3e-102 376.3 593 42.7
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 4.3e-102 375.9 506 47.4
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 5.6e-102 375.6 459 47.5
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 2.1e-101 373.6 445 49.7
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 2.8e-101 373.2 461 48.8
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 4.7e-101 372.5 449 48.6
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 4.7e-101 372.5 335 57.6
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.2e-101 372.1 344 57.3
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 6.2e-101 372.1 450 49.1
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 1.8e-100 370.5 503 46.1
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 3.1e-100 369.8 341 57.2
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 4.0e-100 369.4 419 49.6
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 2.0e-99 367.1 482 45.6
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 2.0e-99 367.1 465 47.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 2.6e-99 366.7 462 49.4
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.6e-99 366.7 462 46.1
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 5.8e-99 365.5 403 48.9
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 7.6e-99 365.2 462 48.1
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 9.9e-99 364.8 339 57.2
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.3e-98 364.4 410 48.3
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 2.2e-98 363.6 482 47.1
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 2.2e-98 363.6 447 49.0
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 2.4e-97 360.1 448 49.6
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 2.4e-97 360.1 425 48.9
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 2.4e-97 360.1 281 70.1
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 3.2e-97 359.8 473 47.6
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 3.2e-97 359.8 338 57.1
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 5.4e-97 359.0 444 48.0
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 9.2e-97 358.2 421 49.2
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.7e-96 356.7 459 47.5
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 3.5e-96 356.3 460 46.3
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.0e-95 354.8 418 49.5
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 3.0e-95 353.2 351 53.3
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 8.7e-95 351.7 452 47.3
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 9.6e-94 348.2 452 45.1
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.6e-93 346.3 432 48.6
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 6.2e-93 345.5 351 57.5
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.4e-92 343.6 489 43.8
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 3.1e-92 343.2 379 53.0
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 4.0e-92 342.8 354 50.3
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 5.2e-92 342.4 443 45.8
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 6.9e-92 342.0 441 46.7
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.5e-91 340.9 324 55.6
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 7.6e-91 338.6 458 45.9
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 2.2e-90 337.0 420 47.6
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 2.9e-90 336.7 434 47.2
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 3.2e-89 333.2 467 44.8
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 9.3e-89 331.6 433 47.1
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.7e-87 327.4 477 44.2
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 1.9e-86 323.9 464 44.2
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 1.9e-86 323.9 451 45.0
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 3.3e-86 323.2 451 45.0
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 1.3e-85 321.2 391 49.4
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.4e-84 317.0 388 48.2
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 2.6e-83 313.5 396 44.9
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 1.9e-81 307.4 462 40.5
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 4.2e-81 306.2 296 50.7
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 6.7e-79 298.9 360 50.8
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 5.6e-78 295.8 497 41.4
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 5.3e-76 289.3 323 48.9
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 2.0e-75 287.3 428 43.2
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 2.6e-75 287.0 448 42.0
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.9e-73 280.8 356 44.9
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 6.5e-66 255.8 445 38.7
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 3.9e-63 246.5 347 45.8
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 1.3e-61 241.5 336 45.2
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 3.1e-60 236.9 309 44.7
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 2.2e-53 214.2 294 39.8
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 1.1e-52 211.8 482 35.5
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 4.5e-51 206.5 202 51.5
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 2.7e-48 197.2 471 34.2
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.8e-47 194.5 273 42.9
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.7e-47 192.6 168 60.1
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.5e-41 174.1 231 45.9
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 3.6e-40 170.2 167 53.9
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.1e-36 158.7 103 69.9
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 7.0e-36 156.0 184 44.6
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 3.0e-31 140.6 126 58.7
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 4.0e-31 140.2 211 35.5
Sc03g0006740 Simmondsia chinensis HOM05D005646 ORTHO05D006828 5.2e-31 139.8 118 70.3
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 8.8e-31 139.0 122 54.1
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.1e-28 130.6 264 35.6
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 4.1e-28 130.2 118 57.6
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 1.3e-26 125.2 125 49.6
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.3e-26 125.2 256 30.9
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 2.3e-23 114.4 144 47.9
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.2e-22 112.1 126 51.6
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 1.2e-22 112.1 126 51.6
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 1.4e-20 105.1 75 69.3
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.2e-16 92.0 89 52.8
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 5.2e-15 86.7 52 76.9
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.2e-14 85.5 64 56.2
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 2.3e-10 71.2 46 67.4
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.9e-09 68.2 71 46.5
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 5.6e-09 66.6 117 36.8
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 6.1e-08 63.2 45 57.8
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 1.0e-07 62.4 127 29.9
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 8.9e-07 59.3 152 28.9
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 1.2e-06 58.9 44 65.9
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 9.8e-06 55.8 163 31.9


User provided reference genes

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